View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_46 (Length: 278)
Name: NF3190_low_46
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_46 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 259
Target Start/End: Original strand, 2337174 - 2337438
Alignment:
| Q |
3 |
cgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctgtatgtgaagacatgtgtcccttcacattgtt |
102 |
Q |
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| T |
2337174 |
cgattgttcaaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttatgtatgtgaagacatgtgttccttcacatcgtt |
2337273 |
T |
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| Q |
103 |
gaagcccttggtaatcatgatgagtactttcagagaacgaatgatatagtgggtagaacatgacttgaagaagtgcatcgttgctcttcgtatacta--- |
199 |
Q |
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| T |
2337274 |
gaagcccttggtaatcatgatgagtactttcagaaaacgaatgatatagtgggtagaacatgacttgaagaagtgcatcgttgctcttagtatactaaca |
2337373 |
T |
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| Q |
200 |
-----atatacatatagatcaccaactaacagtgtggatgactatgtacgtatctgtgaaagcac |
259 |
Q |
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| T |
2337374 |
tatatatatatatatagatcaccaactaacagtgtggatgactatgtacgtatctgtgaaagcac |
2337438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 29264974 - 29264728
Alignment:
| Q |
13 |
aatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctgtatgtgaagacatgtgtcccttcacattgttgaagcccttg |
112 |
Q |
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| T |
29264974 |
aatgactacttctctgaaaatcctgtatacacagaggctcaatttcgacgaaggttccgtatgcgaagacatgtgttccttcgcatcgatgaagcccttg |
29264875 |
T |
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| Q |
113 |
gtaatcatgatgagtactttcagagaacgaatgatatagtgggtagaacatgac--------ttgaagaagtgcatcgttgctcttcgtatactaatata |
204 |
Q |
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| T |
29264874 |
gtaatcatgatgagtactttcaaagaaggattggtgcagtgggtagaaagggactttcaccattgcagaagtgcactgctgctcttcgtatacta----g |
29264779 |
T |
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| Q |
205 |
catatagatcaccaactaacagtgtggatgactatgtacgtatctgtgaaa |
255 |
Q |
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| T |
29264778 |
catatggatcaccagctgacagtgtcgatgactatgtacgtatcggtgaaa |
29264728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 19731352 - 19731293
Alignment:
| Q |
12 |
aaatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctg |
71 |
Q |
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| T |
19731352 |
aaatgactacttctatgaaaatccagtatacacagatgctcaatttggacgaaggttctg |
19731293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 26676085 - 26676010
Alignment:
| Q |
13 |
aatgactacttctctgaaaatcctgtatacacggaggctcaattttgacaaaggttctgtatgtgaagacatgtgt |
88 |
Q |
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| T |
26676085 |
aatgagtatttctctgaaaatccagtatacacacaagctcaatttcgacaaaggttccgaatgcaaagacatgtgt |
26676010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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