View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3190_low_47 (Length: 273)
Name: NF3190_low_47
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_47 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 5478402 - 5478639
Alignment:
| Q |
13 |
aatatgtacacgtatttatccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaatcgct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5478402 |
aatatgtacacgtatttatccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaagcgct |
5478501 |
T |
|
| Q |
113 |
aacaatttgaaaagtttgattcacatgaaatatttacagttgaagttgtagctgagtcccgcattactaagaattttaaggaaggtttatttatgcatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||| ||||||||||| |
|
|
| T |
5478502 |
aacaatttgaaaagtttgattcacatgaaatatttacagttgaagttgtagcagagtcccgcattactaagaatttt-agtaagg----tttatgcatgt |
5478596 |
T |
|
| Q |
213 |
aggtagtttttgaaagtaagattcaagttgttaacatttggta |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5478597 |
aggtagtttttgaaagtaagattcaagttgttaacatttggta |
5478639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 163967 - 163892
Alignment:
| Q |
32 |
ccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaa |
107 |
Q |
| |
|
|||||||| |||||||||||| ||||| || || || | ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
163967 |
ccacctcggcgaacatttcgtgacattgcccatcgccctacttctatttgtctagatgtgatccaagcgggctcaa |
163892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 18343402 - 18343477
Alignment:
| Q |
32 |
ccacctcgacgaacatttcgtaacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaa |
107 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18343402 |
ccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaa |
18343477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 7023 - 6989
Alignment:
| Q |
73 |
ttctatttgtctagatgtgatccaagcaggctcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7023 |
ttctatttgtctagatgtgatccaagcgggctcaa |
6989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 35195108 - 35195074
Alignment:
| Q |
73 |
ttctatttgtctagatgtgatccaagcaggctcaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35195108 |
ttctatttgtctagatgtgatccaagcgggctcaa |
35195074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University