View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_49 (Length: 256)
Name: NF3190_low_49
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 4498865 - 4498620
Alignment:
| Q |
1 |
ttcccacattttcgtccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttc |
100 |
Q |
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| T |
4498865 |
ttcccacattttcatccctcttgacagataaagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttc |
4498766 |
T |
|
| Q |
101 |
tgataaagaaaatagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcgga |
200 |
Q |
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| T |
4498765 |
tgatcaagaaagtagcaatgcaaaccccccaaaaccctgctgcaaatccaactcccattcctatgtagaaatctgatgtgttgaagaaacctgcatcgga |
4498666 |
T |
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| Q |
201 |
atttccaccctccaaaacttgtttaagtttggtacaattgttcatc |
246 |
Q |
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| T |
4498665 |
atttccaccctccaaaacttgtttaagtttggtacaattgttcatc |
4498620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 4329074 - 4329289
Alignment:
| Q |
31 |
aagacaaaggtatcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgataaagaaaatagcaatgcaaacccccc |
130 |
Q |
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| T |
4329074 |
aagacaaaggtctcataaacaagatctttcaagcggtcaagaaaatgaaaataagcatgcctgcaagttctgttaaagaaaatagcaatgcaaacccccc |
4329173 |
T |
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| Q |
131 |
aaaaccctgctgcaaatccaactcccattcctatgtagaaatctaatgtgttgaagaaacctgcatcggaatttccaccctccaaaacttgtttaagttt |
230 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||| | |||||| ||||| |||||||||| ||||||||||||||| | ||| |
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| T |
4329174 |
aaaaccctgctgcaaatccaactcccattcctacgtagaaatctgatgtgtcaacgaaaccagcatcagaatttccacgctccaaaacttgtttcatttt |
4329273 |
T |
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| Q |
231 |
ggtacaattgttcatc |
246 |
Q |
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|||||||| |||||| |
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| T |
4329274 |
tgtacaattattcatc |
4329289 |
T |
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