View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_5 (Length: 719)
Name: NF3190_low_5
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 302 - 705
Target Start/End: Original strand, 2572067 - 2572470
Alignment:
| Q |
302 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
401 |
Q |
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| T |
2572067 |
caacacttttctgaataaaaagttgatattcatagaaaaaggaagtaaatcattgtagtcacaaagcataactagcacgtaaaacaatatacacacatgt |
2572166 |
T |
|
| Q |
402 |
gacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtac |
501 |
Q |
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| T |
2572167 |
gacgttcaaggggaatggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtac |
2572266 |
T |
|
| Q |
502 |
acgtcaagttaccccccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaatggtagttaggcata |
601 |
Q |
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| T |
2572267 |
acgtcaagttaccccccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaatggtagttaggcata |
2572366 |
T |
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| Q |
602 |
gttaggcaactgccatattttttcctactataaataccagaaagtttcgttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagt |
701 |
Q |
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| T |
2572367 |
gttaggcaactgccatattttttcctactataaataccagaaagtttagttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagt |
2572466 |
T |
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| Q |
702 |
ttgt |
705 |
Q |
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| T |
2572467 |
ttgt |
2572470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 2571812 - 2572069
Alignment:
| Q |
18 |
actgccggttgatcaaaactattggatcgcaatggaaatttggctttggctggctttagctatgtattgtttacgtaaaaggtcatacaagtgtgaattg |
117 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2571812 |
actgctggttgatcaaaactattggatcgcaatagaaatttggctttggctggctttagctatgtattgtttacgtaaaaggtcatacaagtgtgaattg |
2571911 |
T |
|
| Q |
118 |
tgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgacaaatacttgtataaaaaata |
217 |
Q |
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| T |
2571912 |
tgatttattgaaagtatcaaaattaatctcaactacttattgcactcaggaaaatatgaaggaattatggagaaaacgacaaatacttgtataaaaaata |
2572011 |
T |
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| Q |
218 |
taaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
275 |
Q |
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| T |
2572012 |
taaatttgttagttttgaattccttaaaagttaaaacaacaactacaggatccatcaa |
2572069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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