View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_low_56 (Length: 250)

Name: NF3190_low_56
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_low_56
NF3190_low_56
[»] chr7 (11 HSPs)
chr7 (155-247)||(9263502-9263594)
chr7 (155-247)||(9263030-9263122)
chr7 (155-247)||(9267782-9267874)
chr7 (82-138)||(9263144-9263200)
chr7 (82-138)||(9267704-9267760)
chr7 (82-138)||(9263425-9263480)
chr7 (179-247)||(9267564-9267632)
chr7 (52-88)||(8081496-8081532)
chr7 (52-88)||(42974854-42974890)
chr7 (56-88)||(8832397-8832429)
chr7 (52-88)||(38595564-38595600)
[»] chr1 (5 HSPs)
chr1 (52-88)||(52010923-52010959)
chr1 (52-88)||(11397801-11397837)
chr1 (52-88)||(12896634-12896670)
chr1 (52-88)||(12898939-12898975)
chr1 (52-88)||(27552066-27552102)
[»] chr8 (1 HSPs)
chr8 (52-88)||(44893543-44893579)
[»] chr5 (3 HSPs)
chr5 (52-88)||(37811972-37812008)
chr5 (60-88)||(3407467-3407495)
chr5 (52-88)||(19333529-19333565)
[»] chr4 (4 HSPs)
chr4 (52-88)||(34513603-34513639)
chr4 (52-88)||(28162922-28162958)
chr4 (60-88)||(34512238-34512266)
chr4 (60-88)||(48738196-48738224)
[»] chr3 (4 HSPs)
chr3 (52-88)||(25233433-25233469)
chr3 (52-88)||(8574991-8575027)
chr3 (52-88)||(41926959-41926995)
chr3 (52-88)||(52700849-52700885)
[»] chr6 (2 HSPs)
chr6 (49-88)||(5086989-5087028)
chr6 (52-88)||(21108636-21108672)
[»] chr2 (1 HSPs)
chr2 (52-86)||(30982311-30982345)
[»] scaffold0026 (1 HSPs)
scaffold0026 (52-88)||(100983-101019)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 9263502 - 9263594
Alignment:
Q  155 aatatgaattggcactcaccaatgcagctctgatgcagaaacttgtcgctcctttcagcaaatctaccgcaatgctccgacgaagcgagcggt 247  Q
    ||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9263502 aatatgacttggcacttaccaatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcgagcggt 9263594  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 9263122 - 9263030
Alignment:
Q  155 aatatgaattggcactcaccaatgcagctctgatgcagaaacttgtcgctcctttcagcaaatctaccgcaatgctccgacgaagcgagcggt 247  Q
    |||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  9263122 aatatgaattggcactcaccaatgtagctcggatgaaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacaaagcgagcggt 9263030  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 9267782 - 9267874
Alignment:
Q  155 aatatgaattggcactcaccaatgcagctctgatgcagaaacttgtcgctcctttcagcaaatctaccgcaatgctccgacgaagcgagcggt 247  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||    
T  9267782 aatatgacttggcactcaccaatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctcccccaatgctccgacgaagcgagcggt 9267874  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 9263144 - 9263200
Alignment:
Q  82 cttaaactttacaagttaactcacaattcatcttgcagacttatttgaccaagaaga 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9263144 cttaaactttacaagttaactcacaattcatcttgcagacttatttgatcaagaaga 9263200  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 9267760 - 9267704
Alignment:
Q  82 cttaaactttacaagttaactcacaattcatcttgcagacttatttgaccaagaaga 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9267760 cttaaactttacaagttaactcacaattcatcttgcagacttatttgatcaagaaga 9267704  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 9263480 - 9263425
Alignment:
Q  82 cttaaactttacaagttaactcacaattcatcttgcagacttatttgaccaagaaga 138  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  9263480 cttaaactttacaagttaac-cacaattcatcttgcagacttatttgatcaagaaga 9263425  T

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Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 9267632 - 9267564
Alignment:
Q  179 cagctctgatgcagaaacttgtcgctcctttcagcaaatctaccgcaatgctccgacgaagcgagcggt 247  Q
    ||||||||||||| |||||||||||||||||||| || ||| |||||||||| |||| |||||||||||    
T  9267632 cagctctgatgcaaaaacttgtcgctcctttcagtaactcttccgcaatgcttcgactaagcgagcggt 9267564  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 8081532 - 8081496
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8081532 aatgtttgaagctcgcttatttgtagggaccttaaac 8081496  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 42974854 - 42974890
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42974854 aatgttagaagctcgcttatttgtagggatcttaaac 42974890  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 8832429 - 8832397
Alignment:
Q  56 ttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||| ||||||||||||||||||||||    
T  8832429 ttagaagctctcttatttgtagggaccttaaac 8832397  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 38595564 - 38595600
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  38595564 aatgttggaagctcacttatttgtagggaccttaaac 38595600  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 52010923 - 52010959
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||||||||||||||||||||||||||||||    
T  52010923 aatgttagaagctcgcttatttgtagggaccttaaac 52010959  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 11397801 - 11397837
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  11397801 aatgttggaagctcgcatatttgtagggaccttaaac 11397837  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12896670 - 12896634
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  12896670 aatgttaaaagcttgcttatttgtagggaccttaaac 12896634  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 12898939 - 12898975
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  12898939 aatgttggaagctcgcttatttatagggaccttaaac 12898975  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 27552066 - 27552102
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  27552066 aatgttaaaagctcgcttatttatagggaccttaaac 27552102  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 44893579 - 44893543
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||||||||||||||    
T  44893579 aatgttggaagctcgcttatttgtagggaccttaaac 44893543  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 37812008 - 37811972
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37812008 aatgttggaagctcgcttatttgtagggaccttaaac 37811972  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 3407467 - 3407495
Alignment:
Q  60 aagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||||||||||||||||||||||    
T  3407467 aagctcgcttatttgtagggaccttaaac 3407495  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 19333529 - 19333565
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| | ||||||||||||||||||||||||||||    
T  19333529 aatgttggtagctcgcttatttgtagggaccttaaac 19333565  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 34513603 - 34513639
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||||||||||||||    
T  34513603 aatgttggaagctcgcttatttgtagggaccttaaac 34513639  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 28162958 - 28162922
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  28162958 aatgttggaagctcgcttatttgtagagaccttaaac 28162922  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 34512266 - 34512238
Alignment:
Q  60 aagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||||||||||||||||||||||    
T  34512266 aagctcgcttatttgtagggaccttaaac 34512238  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 48738224 - 48738196
Alignment:
Q  60 aagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||||||||||||||||||||||    
T  48738224 aagctcgcttatttgtagggaccttaaac 48738196  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 25233433 - 25233469
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25233433 aatgttggaagctcgcttatttgtagggaccttaaac 25233469  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 8575027 - 8574991
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  8575027 aatgttggaagctcacttatttgtagggaccttaaac 8574991  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 41926995 - 41926959
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  41926995 aatgttggaagctcgcttatttatagggaccttaaac 41926959  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 52700885 - 52700849
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| |||||||||||||||||| |||||||||||    
T  52700885 aatgttggaagctcgcttatttgtaaggaccttaaac 52700849  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 5086989 - 5087028
Alignment:
Q  49 acgaatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  5086989 acgaatgttggaagctcgcttatttatagggaccttaaac 5087028  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 21108636 - 21108672
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||| |||||||||||||||||||| |||||||||    
T  21108636 aatgttggaagctcgcttatttgtaggaaccttaaac 21108672  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Complemental strand, 30982345 - 30982311
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaa 86  Q
    |||||| ||||||||||||||||||||||||||||    
T  30982345 aatgttggaagctcgcttatttgtagggaccttaa 30982311  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 100983 - 101019
Alignment:
Q  52 aatgttagaagctcgcttatttgtagggaccttaaac 88  Q
    |||||||||| || |||||||||||||||||||||||    
T  100983 aatgttagaaacttgcttatttgtagggaccttaaac 101019  T

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