View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_59 (Length: 249)
Name: NF3190_low_59
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_59 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 24290565 - 24290768
Alignment:
| Q |
47 |
atatataaagctcaccaattgtcaaaaacagaaacacaacacgaaatagaaaacaaatattagacagtacaatgcaaacttcattatggaacctaaataa |
146 |
Q |
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| T |
24290565 |
atatataaagctcaccaattgtcagaaacagaaacacaacatgaaaaagaaaacaaatattagacagtacaatgcaaacttctttatggaacctaaataa |
24290664 |
T |
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| Q |
147 |
acttttccttcattgatgacagcaaagagaggctgcacttgtnnnnnnntca-tttcagttatctacccattcaacatttaattcaaaaattaaagaaaa |
245 |
Q |
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| T |
24290665 |
acttttccttcattgatgacagcaaagagaagctgcacttgtaaaaaaatcattttcaattatctacccattcaacatctaattcaaaaattaaagaaaa |
24290764 |
T |
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| Q |
246 |
aagt |
249 |
Q |
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|||| |
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| T |
24290765 |
aagt |
24290768 |
T |
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