View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_6 (Length: 717)
Name: NF3190_low_6
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 462 - 697
Target Start/End: Complemental strand, 47198696 - 47198461
Alignment:
| Q |
462 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
561 |
Q |
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| T |
47198696 |
tcccaaacttaaataagcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatct |
47198597 |
T |
|
| Q |
562 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198596 |
agtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaac |
47198497 |
T |
|
| Q |
662 |
attgcatagcctttgcttaagctatctgagtgatct |
697 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
47198496 |
attgcatagcctttgcttaagctatctgagtgatct |
47198461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 478 - 699
Target Start/End: Complemental strand, 47186141 - 47185920
Alignment:
| Q |
478 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
577 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186141 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47186042 |
T |
|
| Q |
578 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
677 |
Q |
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| T |
47186041 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47185942 |
T |
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| Q |
678 |
ttaagctatctgagtgatctgt |
699 |
Q |
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|||||||||||||||||||||| |
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| T |
47185941 |
ttaagctatctgagtgatctgt |
47185920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 215 - 405
Target Start/End: Complemental strand, 47198946 - 47198753
Alignment:
| Q |
215 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
310 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
|
| Q |
311 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
405 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
47198753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
4 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
103 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
104 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
185 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 310 - 405
Target Start/End: Complemental strand, 47186309 - 47186214
Alignment:
| Q |
310 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctctggaat |
405 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttccatactttctcagccatatcttcaatgggtatattctttgtctctggaat |
47186214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 542 - 624
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
542 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
624 |
Q |
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||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 494 - 624
Target Start/End: Original strand, 748538 - 748668
Alignment:
| Q |
494 |
aaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaatgtctcactaggaatta |
593 |
Q |
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||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||||||||| |||||| | |||||||||||||| ||||| | |
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| T |
748538 |
aaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccagctgatcgagtctcgagtggaaatgtctcacttggaataa |
748637 |
T |
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| Q |
594 |
accaaccaagtggaccccatgaccatgcaaa |
624 |
Q |
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|||||| || |||||||| ||||| ||||| |
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| T |
748638 |
gccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 748369 - 748443
Alignment:
| Q |
325 |
cataaacctcctccagaaccaatgttgtttccacactgtctcagccatatcttcaataggtatattctttgtctc |
399 |
Q |
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|||||||||| |||||||||||||||||||||| ||| |||| | ||| |||||||| ||||| ||||| ||||| |
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| T |
748369 |
cataaacctcttccagaaccaatgttgtttccatactctctcggtcatttcttcaattggtatgttcttggtctc |
748443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 676
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
572 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagc |
671 |
Q |
| |
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|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| ||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
672 |
ctttg |
676 |
Q |
| |
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||||| |
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| T |
41414149 |
ctttg |
41414153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 624
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
545 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
624 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
579 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
624 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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