View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_61 (Length: 243)
Name: NF3190_low_61
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 16964666 - 16964442
Alignment:
| Q |
1 |
aaatatttcaaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgtgctgtggactttg |
100 |
Q |
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| T |
16964666 |
aaatatttcaaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgtgctgtggactttg |
16964567 |
T |
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| Q |
101 |
atgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtcgagagttt |
200 |
Q |
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| T |
16964566 |
atgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtcgagagttt |
16964467 |
T |
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| Q |
201 |
cggctattgattatactttagatga |
225 |
Q |
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| T |
16964466 |
cggctattgattatactttagatga |
16964442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 16988787 - 16988669
Alignment:
| Q |
93 |
ggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtc |
192 |
Q |
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| T |
16988787 |
ggacattgaagatagaattcttgatctaatgattcggcacgaaaatctcaaagacatgtttgttgagtgtgtggtacagccgaaggagcgagaattt--- |
16988691 |
T |
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| Q |
193 |
gagagtttcggctattgattat |
214 |
Q |
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| T |
16988690 |
gagagttttggctattgattat |
16988669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 10604983 - 10605165
Alignment:
| Q |
10 |
aaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaaca---cattgataatgatgag---tccaagagttgtgctgtggactttgatg |
103 |
Q |
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| T |
10604983 |
aaacaggccgaaaaggaccggttatctgagcttgttttttcggagaaaaatgccaccgatattgatgaggagtccaagagctgtgcagggaactttgaag |
10605082 |
T |
|
| Q |
104 |
ataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagat |
186 |
Q |
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| T |
10605083 |
atagagttcttgatcagatgactcggcatgaaaatctcaaagacatgtttgttaagtgtgtggtactgaggaaggagcgagat |
10605165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 16820625 - 16820418
Alignment:
| Q |
9 |
caaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgtgctgtggactttgatgataaa |
108 |
Q |
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||||||| |||||||| || |||||||||| || || ||||||| |||| | |||||| ||| ||||||||||||||||||| ||||||| |||| | |
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| T |
16820625 |
caaacaggccgaaaagcacaggttatctgaactggttttttcggctaaaaatgctgataaagataagtccaagagttgtgctgttaactttgaagataga |
16820526 |
T |
|
| Q |
109 |
gttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtcgagagtttcggctatt |
208 |
Q |
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| T |
16820525 |
attcttgatcagttgaaacagcacgaaacgttcaaagacgtgtttgtta------cagttcagtcaaaggagcgagatttggttgagagtttcggctctt |
16820432 |
T |
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| Q |
209 |
gattatactttaga |
222 |
Q |
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||||| |||||||| |
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| T |
16820431 |
gattaaactttaga |
16820418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 16973515 - 16973427
Alignment:
| Q |
74 |
agtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
162 |
Q |
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|||||||||| | ||||||| |||| || |||| |||||||||| |||| | |||| ||||| || |||||||| |||||||||||| |
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| T |
16973515 |
agtccaagagctctgctgtgaacttcgaagatagagttcttgatgagatgactaagcatgaaaagctcaaaggcatatttgttaagtgc |
16973427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 16973585 - 16973545
Alignment:
| Q |
10 |
aaacagtccgaaaaggaccggttatctgagctcgtcttttc |
50 |
Q |
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| T |
16973585 |
aaacaggccgaaaaagaccggttatctgagctcgttttttc |
16973545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 35924345 - 35924251
Alignment:
| Q |
68 |
atgatgagtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
162 |
Q |
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| T |
35924345 |
atgataagtccaagagctctgctgtcaacttcgaagatagagttcttgatgagatgactaagcacgaaaagctcaaaggcatgtttgttaagtgc |
35924251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 35266556 - 35266649
Alignment:
| Q |
69 |
tgatgagtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
162 |
Q |
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|||| |||||||||| | ||||||| |||| || |||| |||||||||| |||| | | |||||||| || |||||||| |||||||||||| |
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| T |
35266556 |
tgataagtccaagagctctgctgtgaacttcgaagatagagttcttgatgagatgactaaacacgaaaagctcaaaggcatatttgttaagtgc |
35266649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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