View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_65 (Length: 238)
Name: NF3190_low_65
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30016979 - 30017203
Alignment:
| Q |
1 |
cttgaattgcagacattttggtggcactcccaatttctgtgagaaatagtatttaagaagaggtgccactttgnnnnnnnnnnnnnnnnnnnn--ctatg |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30016979 |
cttgaattgcagacattttggtggcactcccaatttctgtgagaaatagtatttaagaagaggtgccactttgaaaaaagaaaaagaaaaaaaaactatg |
30017078 |
T |
|
| Q |
99 |
gagccacaaccagaatcccccagtcagactggtgatgaaacttcaccaaattgtgattctggtcttaagaatgtaattgatacagcagcacctttgaaat |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30017079 |
gagccacaaccagaatcccccagtcagactggtgatgaaacttcaccaaattgtgattctggtcttaagaatgtaattgatacagcagcacctttgaaat |
30017178 |
T |
|
| Q |
199 |
ctgtcaaagatgctgtgtccaagtt |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
30017179 |
ctgtcaaagatgctgtgtccaagtt |
30017203 |
T |
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