View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_7 (Length: 646)
Name: NF3190_low_7
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 176 - 638
Target Start/End: Original strand, 49301889 - 49302351
Alignment:
| Q |
176 |
cttgacctaaagtggtcccaatgtgaatttcaagcctttggtttcctttaaatatatgcagggtccacatgcatcaatgggtaatcctttcctctacaat |
275 |
Q |
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| T |
49301889 |
cttgacctaaagtggtcccaatgtgaatttcaagccttttgtttcctttaaatatatgcagggtccacatgcatcaaagggtaatcctttcctctacaat |
49301988 |
T |
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| Q |
276 |
acctccattcgtgtcttgtgcaatgccaacacttctgaaggtttcaatcctctaaaggatgtatctttaccagaaattcatctctatggaggtgaagtat |
375 |
Q |
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| T |
49301989 |
acctccattcgtgtcttgtgcaatgccaacacttctgaaggtttcaatcctctaaaggatgtatctttaccagaaattcatctctatggaggtgaagtat |
49302088 |
T |
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| Q |
376 |
ctcctaaactcctttcacttccacctgagaacgccccacgccggtatcttgccttctttgcaggtggtatgcatggcccaattcgcccaattcttctcca |
475 |
Q |
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| T |
49302089 |
ctcctaaactcctttcacttccacctgagaacgccccacgccggtatcttgccttctttgcaggtggtatgcatggcccaattcgcccaattcttctcca |
49302188 |
T |
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| Q |
476 |
acactggaaaaacagagacaaagatattcttgtcaatgagtatctccctaaaggcatagactactattccataatgctaagctccaagttctgtctttgt |
575 |
Q |
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| T |
49302189 |
acactggaaaaacagagacaaagatattcttgtcaatgagtatctccctaaaggcatagactactattccataatgctaagctccaagttctgtctttgt |
49302288 |
T |
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| Q |
576 |
ccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
638 |
Q |
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| T |
49302289 |
ccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
49302351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 49301732 - 49301824
Alignment:
| Q |
19 |
cacatttagttctcccagttattatggatttggccaatctttagtttttgtatgttccattaaagtnnnnnnnttaatagttgatatcgtaac |
111 |
Q |
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| T |
49301732 |
cacatttagttctcccagttattatggatttggccaatctttagtttttgtatgttccattaaagtaaaaaaattaatagttgatatcgtaac |
49301824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 638
Target Start/End: Original strand, 44629171 - 44629249
Alignment:
| Q |
560 |
caagttctgtctttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcct |
638 |
Q |
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| T |
44629171 |
caagttttgtttgtgtccaagtggttatgaagtagcaagtccaagaatagtggaagctatatttgcagaatgtgtgcct |
44629249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 571 - 640
Target Start/End: Complemental strand, 36514640 - 36514571
Alignment:
| Q |
571 |
tttgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgcagaatgtgtgcctat |
640 |
Q |
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| T |
36514640 |
tttgtccaagtgggtgggaagtggcaagtccaagaattgttgaggcaatttatgctgaatgtgtacctat |
36514571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 573 - 625
Target Start/End: Complemental strand, 47728010 - 47727958
Alignment:
| Q |
573 |
tgtccaagtggttttgaagtggctagcccaagaattgtggaatcaatttatgc |
625 |
Q |
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| T |
47728010 |
tgtccaagtggatatgaagtggctagtccaagaattgtggaagcaattaatgc |
47727958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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