View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_73 (Length: 229)
Name: NF3190_low_73
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11559818 - 11559593
Alignment:
| Q |
1 |
aaaatatgaagtgtgtgttgaaatgcaacgaatagagattgtgataacggtgagtaaacgagaccaccaacacggaaaccggtccacccaccacccaccg |
100 |
Q |
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| T |
11559818 |
aaaatatgaagtgtgtgctgaaatgcaacgaatagagattgtgataacggtgagtaaacgagaccaccaacacggaaaccggtccacccaccatccaccg |
11559719 |
T |
|
| Q |
101 |
agttgacccaacaaaaacaagtctcaacacccatttatggtcaatcaatccgagtctaattaggagcaacacgaaagttgtgttaagacaacccttaacc |
200 |
Q |
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| T |
11559718 |
agttgacccaacaaaaacaagtctcagcaaccatttctggtcaatcaatctgagtctaattaggagcaacacgaaagttgtgttaagacaacccttaacc |
11559619 |
T |
|
| Q |
201 |
taaaagctatgcttacagatctccgg |
226 |
Q |
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|||| |||||||||||||||||||| |
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| T |
11559618 |
caaaaactatgcttacagatctccgg |
11559593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 25657219 - 25657401
Alignment:
| Q |
42 |
tgataacggtgagtaaacgagaccaccaacacggaaaccggtccacccaccacccaccgagttgacccaacaaaaacaagtctcaacacccatttatggt |
141 |
Q |
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| T |
25657219 |
tgataacggttagtgaacccgatcgccaacacgaaaacgggtccacccagcacccactgagtcgacccaacatcaactactctccacaaccatttatggt |
25657318 |
T |
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| Q |
142 |
caatcaatccgagtctaattaggagcaacacgaaagttgtgttaagacaacccttaacctaaaagctatgcttacagatctcc |
224 |
Q |
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| T |
25657319 |
caaacaatttgagtctaattatgagcaacacaaaagttgtgttaagacaaccctcaacctagaagcttagcttacaaatctcc |
25657401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 30917714 - 30917766
Alignment:
| Q |
117 |
acaagtctcaacacccatttatggtcaatcaatccgagtctaattaggagcaa |
169 |
Q |
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||||||||| ||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
30917714 |
acaagtctccacaaccatttatggtcaaacaatttgagtctaattaggagcaa |
30917766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 9508424 - 9508270
Alignment:
| Q |
19 |
tgaaatgcaacgaatagagattgtgataacggtgagtaaacgagaccaccaacacggaaaccggtccacccaccacccaccgagttgacccaacaaaaac |
118 |
Q |
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||||||||||| ||| | ||| ||||||| |||||| ||| ||||| || |||||||||| |||| |||||||||||| |||| |||||||||| ||| |
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| T |
9508424 |
tgaaatgcaacaaatgcatattatgataacagtgagtgaacaagaccgccgacacggaaacgggtcaacccaccacccattgagtagacccaacaacaac |
9508325 |
T |
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| Q |
119 |
aagtctcaacacccatttatggtcaatcaatccgagtctaattaggagcaacacg |
173 |
Q |
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| T |
9508324 |
aactctcaacaaccatttatggtcaatcaatccgagtctaactaggatcaacacg |
9508270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 206
Target Start/End: Original strand, 1773759 - 1773834
Alignment:
| Q |
131 |
ccatttatggtcaatcaatccgagtctaattaggagcaacacgaaagttgtgttaagacaacccttaacctaaaag |
206 |
Q |
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|||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||| |
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| T |
1773759 |
ccatttatggtccaacaatccaagtctaattaggagcaacataaaagttgtgttaagacaaccctcaacccaaaag |
1773834 |
T |
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