View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_75 (Length: 228)
Name: NF3190_low_75
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_75 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 50804574 - 50804347
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
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| T |
50804574 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
50804475 |
T |
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| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
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| T |
50804474 |
tgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
50804375 |
T |
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| Q |
201 |
tgtttggattgataggagatgcgttgtg |
228 |
Q |
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| T |
50804374 |
tgtttggattgataggagatgcgttgtg |
50804347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 50871303 - 50871530
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50871303 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
50871402 |
T |
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| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
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| T |
50871403 |
tgttaactagaaccatcaatttttttctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
50871502 |
T |
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| Q |
201 |
tgtttggattgataggagatgcgttgtg |
228 |
Q |
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| T |
50871503 |
tgtttggattgataggagatgcgttgtg |
50871530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 19057611 - 19057840
Alignment:
| Q |
1 |
atgttccattagtgcagtattaagacttaactaacttattgcttaatgagacaattcctaatttgcagtgataaactttttgtgcttcgtataaatgtgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19057611 |
atgttccattagtgcagtattaagacttaactaacttattgcttaattagacaattcctaatttgcagtgataaactttttgtgcttcttataaatgtgt |
19057710 |
T |
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| Q |
101 |
tgttaactagaaccatcaannnnnnnctttgttcaggactattgagtcgggttgaataacataattttatatcattgtatctacatctttttgtttgctt |
200 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
19057711 |
tgttaactagaaccatcaatttttttctttgttcaggactgttgagtcgggttgaataacatacttttatatcattgtatttacatctttttgtttgctt |
19057810 |
T |
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| Q |
201 |
tgtttggattgatagga--gatgcgttgtg |
228 |
Q |
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| T |
19057811 |
tgtttggattgataggaatgatgcgttgtg |
19057840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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