View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_low_76 (Length: 227)

Name: NF3190_low_76
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_low_76
NF3190_low_76
[»] chr3 (3 HSPs)
chr3 (22-217)||(47092716-47092894)
chr3 (1-79)||(47092621-47092699)
chr3 (22-79)||(47092679-47092736)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 47092716 - 47092894
Alignment:
Q  22 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacgttagcatttcccttctctttatatcaactaaacaaacactca 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  47092716 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacgttagcatttcccttctctttatatcaact------------- 47092802  T
Q  122 ccaaaaacacaatacctgctatatagtgcccttcaatagtattatttcaaattttttgttataaaattaaaaataaaaccttagaaattaatgtgt 217  Q
        ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092803 ----aaacacaatacctactatatagtgcccatcaatagtattatttcaaattttttgttataaaattaaaaataaaaccttagaaattaatgtgt 47092894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 47092621 - 47092699
Alignment:
Q  1 tacaatcacgtgcaaaagagaatttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092621 tacaatcacgtgcaaaagagaatttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 47092699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 47092679 - 47092736
Alignment:
Q  22 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47092679 atttcaacaagactttccacgctacaaaccaaatattatttcaacaagactttccacg 47092736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University