View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3190_low_77 (Length: 225)

Name: NF3190_low_77
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3190_low_77
NF3190_low_77
[»] chr8 (2 HSPs)
chr8 (120-181)||(4638133-4638194)
chr8 (1-40)||(4638014-4638053)
[»] chr7 (1 HSPs)
chr7 (124-181)||(12808346-12808403)
[»] chr6 (1 HSPs)
chr6 (124-181)||(2634181-2634238)
[»] scaffold0103 (1 HSPs)
scaffold0103 (124-179)||(5773-5828)


Alignment Details
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 4638133 - 4638194
Alignment:
Q  120 gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4638133 gcaccaactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat 4638194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4638014 - 4638053
Alignment:
Q  1 acatataaatcaatttttagaaacattatccaacattcat 40  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  4638014 acatataaatcaattttaagaaacattatccaacattcat 4638053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 12808403 - 12808346
Alignment:
Q  124 caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat 181  Q
    ||||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  12808403 caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat 12808346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 2634181 - 2634238
Alignment:
Q  124 caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaagat 181  Q
    ||||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  2634181 caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaagat 2634238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 5828 - 5773
Alignment:
Q  124 caactcccagaatcacaaaaccttatgcttgatgaccaagaaacctgcagaagaag 179  Q
    ||||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||    
T  5828 caactccaagaatcacaaacccttatgcttgacaaccaagaaacctgcagaagaag 5773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University