View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_83 (Length: 205)
Name: NF3190_low_83
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_83 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 7e-85; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 5312695 - 5312861
Alignment:
| Q |
24 |
cgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcc |
123 |
Q |
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| T |
5312695 |
cgaaattttgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcc |
5312794 |
T |
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| Q |
124 |
attgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
190 |
Q |
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| T |
5312795 |
attgctattctttttggtgttgttggtattggtgctcttcccggtttagtgcctcttctcatctgtg |
5312861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 5305485 - 5305643
Alignment:
| Q |
24 |
cgaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcc |
123 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5305485 |
cgaaattgtgaattacattgtagttgatgcatatagaatgggagaattcccatggtggtttcatataacatggacttgtgcattgcaacttgttctttcc |
5305584 |
T |
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| Q |
124 |
attgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
182 |
Q |
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| T |
5305585 |
attgttatcctttttggtgttgtaggtattggtgctcttcctggtttagtccctcttct |
5305643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 14950931 - 14950774
Alignment:
| Q |
25 |
gaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcca |
124 |
Q |
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| T |
14950931 |
gaaattgtgaattacattgcagttgatgcttatagaatgggagaatttccatggtggtttcatatggcatggacttctgtattgcaacttgttctttcta |
14950832 |
T |
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| Q |
125 |
ttgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
182 |
Q |
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||| | | |||||| ||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
14950831 |
ttggtgtccttttttttgttgttggtattggtgctcttcctggtttagtccctcttct |
14950774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 15124735 - 15124892
Alignment:
| Q |
25 |
gaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcca |
124 |
Q |
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| T |
15124735 |
gaaattgtgaattacattgcagttgattcttatagaatgggagaatttccatggtggtttcatataacatggacttctgcattgcaactttttctttcca |
15124834 |
T |
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| Q |
125 |
ttgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
182 |
Q |
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| T |
15124835 |
ccagtgttctctttattgttgttggtattggtgctcttcctggtttagtgcctcttct |
15124892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 5291612 - 5291455
Alignment:
| Q |
25 |
gaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcca |
124 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| |
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| T |
5291612 |
gaaattgtgaattacattgcagttgatgcatacagaatgggagaatttccatggtggtttcatacaacatggacttgtgcatttcaacttattctttcca |
5291513 |
T |
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| Q |
125 |
ttgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
182 |
Q |
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|| | | || |||| |||||| ||| ||||||||||||| |||||||| |||||||| |
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| T |
5291512 |
ttagtgtcctctttggtgttgtcggtgttggtgctcttcctggtttagtccctcttct |
5291455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 5284117 - 5283960
Alignment:
| Q |
25 |
gaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcca |
124 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||| | ||| ||||| |||| | |
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| T |
5284117 |
gaaattgtgaattacattgtagttgatgcatatagaatgggagaatttccatggtggtttcatatggcatgggcttctgcacttcaaattgttttgtcta |
5284018 |
T |
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| Q |
125 |
ttgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctcttct |
182 |
Q |
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| T |
5284017 |
tttttattctttttggtgttgtaggtattggtgctcttccaggtttagtccctcttct |
5283960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 31527614 - 31527459
Alignment:
| Q |
25 |
gaaattgtgaattacattgcaattgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtgcattgcaacttgttctgtcca |
124 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
31527614 |
gaaattgtgaattacattgcagttgatgcatatagaatgggagaatttccatggtggtttcatataacatggacttgtatactacaacttgttctgtcca |
31527515 |
T |
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| Q |
125 |
ttgctattctttttgttgttgttggtattggtgctcttcccggtttagtgcctctt |
180 |
Q |
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||||| | ||||| | |||||||||||||||||||||||| |||||||| |||||| |
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| T |
31527514 |
ttgctgtccttttcggtgttgttggtattggtgctcttcctggtttagtccctctt |
31527459 |
T |
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