View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3190_low_9 (Length: 586)
Name: NF3190_low_9
Description: NF3190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3190_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Complemental strand, 55263539 - 55262966
Alignment:
| Q |
7 |
atttcctgtctgcgaagagtaaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtagttgatgagttat |
106 |
Q |
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| T |
55263539 |
atttcctgtgtgcgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55263440 |
T |
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| Q |
107 |
gtatgatttaattatgcattatttaaaccaaatgtgtttgattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
202 |
Q |
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| T |
55263439 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55263344 |
T |
|
| Q |
203 |
tagtggggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttcattgcaatgtgactgacattctaatcagaaagcatagattatac |
302 |
Q |
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| T |
55263343 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55263244 |
T |
|
| Q |
303 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
398 |
Q |
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| T |
55263243 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55263148 |
T |
|
| Q |
399 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
498 |
Q |
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| T |
55263147 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55263048 |
T |
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| Q |
499 |
gatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
580 |
Q |
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| T |
55263047 |
gctttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
55262966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Complemental strand, 55270403 - 55269830
Alignment:
| Q |
7 |
atttcctgtctgcgaagagtaaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtagttgatgagttat |
106 |
Q |
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| T |
55270403 |
atttcctgtgtgtgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
55270304 |
T |
|
| Q |
107 |
gtatgatttaattatgcattatttaaaccaaatgtgtttgattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaagg |
202 |
Q |
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| T |
55270303 |
g----atttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55270208 |
T |
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| Q |
203 |
tagtggggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttcattgcaatgtgactgacattctaatcagaaagcatagattatac |
302 |
Q |
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| T |
55270207 |
tggtgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatac |
55270108 |
T |
|
| Q |
303 |
aactacaattaatagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
398 |
Q |
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| T |
55270107 |
aactacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttg |
55270012 |
T |
|
| Q |
399 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaacta |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55270011 |
gagttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaacta |
55269912 |
T |
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| Q |
499 |
gatttcttcgtgtttctgtaccatcgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
580 |
Q |
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| T |
55269911 |
gctttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtc |
55269830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 343 - 462
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
343 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
442 |
Q |
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||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
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| Q |
443 |
tgcttatgcacaggttagtt |
462 |
Q |
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|||||||||||||||||||| |
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| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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