View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3191_high_1 (Length: 586)
Name: NF3191_high_1
Description: NF3191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3191_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 1875598 - 1876169
Alignment:
| Q |
1 |
ctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgttgcctgaaaaggacttttcagtcacttcactttcagtgacagttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875598 |
ctttgacaatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgtttcctgaaaaggacttttcagtcacttcactttcagtgacagttgg |
1875697 |
T |
|
| Q |
101 |
gttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggaggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875698 |
gttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggaggg |
1875797 |
T |
|
| Q |
201 |
tgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1875798 |
tgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtg |
1875897 |
T |
|
| Q |
301 |
ttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1875898 |
ttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcatt |
1875997 |
T |
|
| Q |
401 |
ggttggatcaagtgcagcacttggannnnnnngtggaatgattgtgtatttgcttcttaagctaaggaattcgacaaaagataaaccataatataatata |
500 |
Q |
| |
|
||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
1875998 |
ggtgggatcaagtgcagcactaggatttttggttggaatgattgtgtatttgcttcttaagctaaggaatttgacaaaagataaacc-----ataatata |
1876092 |
T |
|
| Q |
501 |
gttccataaaatggatttggattatttgaagtaacaaatttcacgcggtcagaatattggtggtcattggattgaga |
577 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
1876093 |
ggtccataaaatggatttggattatttgaagtaacaaatttcatgcgatcagaatattggtggtcattggattgaga |
1876169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 7 - 488
Target Start/End: Original strand, 1808000 - 1808481
Alignment:
| Q |
7 |
caatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgttgcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgat |
106 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| || |||| ||| | || ||||||| ||| |||||||| || ||| |||||||||||||||| | || |
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|
| T |
1808000 |
caatgttgaactcagtgatagctgtttgtaaattatcaacagatcttttccctgaaagggaattttcagttacatcaatttcagtgacagttggactaat |
1808099 |
T |
|
| Q |
107 |
gaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtg |
206 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1808100 |
gaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggaggaaggagtggagggtgtgtt |
1808199 |
T |
|
| Q |
207 |
gcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgc |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| || | |
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|
| T |
1808200 |
gcacttcttggttttgcaaaattggtattgggattggttttaggaacttctttggcacacattttgcaacaatttccagttgggattttaggtgtgttac |
1808299 |
T |
|
| Q |
307 |
ttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattggttgg |
406 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1808300 |
ttttgtttgctggtattgaacttgctatgtgtgctagggatatgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttgg |
1808399 |
T |
|
| Q |
407 |
atcaagtgcagcacttggannnnnnngtggaatgattgtgtatttgcttcttaagctaaggaattcgacaaaagataaacca |
488 |
Q |
| |
|
||||||||| || |||||| |||||||||||| ||| || | |||||||||||||||| || || ||||||||| |
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|
| T |
1808400 |
atcaagtgctgctcttggatttttggttggaatgattgtttatgtgttacttaagctaaggaattggagtaatgataaacca |
1808481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 25798212 - 25797794
Alignment:
| Q |
7 |
caatcttgaactctgtgatagctgtttgtaagttgtcaaaggatttgttgcctgaaaaggacttttcagtcacttcactttcagtgacagttgggttgat |
106 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||| ||| | || || |||||||| |||||||| |||||| |||||||||||||||| | || |
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|
| T |
25798212 |
caattttgaactctgtcatagctgtttgtaagttatcaacagatctttttccagaaaaggaattttcagttacttcaatttcagtgacagttggactaat |
25798113 |
T |
|
| Q |
107 |
gaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttggtggaaggagtggagggtgtgtg |
206 |
Q |
| |
|
||||||| | ||||||||||||||| ||||| |||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
25798112 |
gaatttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcaggacaatataaatttggtggaagaagtggagggtgtgtg |
25798013 |
T |
|
| Q |
207 |
gcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattttaatgcagtttccagttgggattttaggtgttttgc |
306 |
Q |
| |
|
||||||||||||| | |||||||||||| |||||| |||| |||||||| |||||| ||||||||| | |||||| || ||||| ||||| || |||| |
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|
| T |
25798012 |
gcacttcttggtgcaggaaaattggtattaggattgttgttgggaacttccttggcaaacattttaaagatgtttccggtcgggatcttaggagtgttgc |
25797913 |
T |
|
| Q |
307 |
ttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattggttgg |
406 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||| |
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|
| T |
25797912 |
ttttgtttgctggaattgaacttgctatgtgtgctagagacatgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttgg |
25797813 |
T |
|
| Q |
407 |
atcaagtgcagcacttgga |
425 |
Q |
| |
|
||||| |||| || ||||| |
|
|
| T |
25797812 |
atcaaatgcatcatttgga |
25797794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 63 - 373
Target Start/End: Complemental strand, 49993313 - 49993003
Alignment:
| Q |
63 |
aaggacttttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggac |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||| | | ||| ||||||||||||| ||||||| || ||||||||||| ||| |
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|
| T |
49993313 |
aaggacttttcagtaacttcactttcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggaggat |
49993214 |
T |
|
| Q |
163 |
tagcaggacagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggc |
262 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||| || || || |||| ||| ||||| |
|
|
| T |
49993213 |
tagcaggacagtataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggc |
49993114 |
T |
|
| Q |
263 |
acacattttaatgcagtttccagttgggattttaggtgttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaa |
362 |
Q |
| |
|
|| |||| | |||||||| || || |||||||| || ||| | ||||||||||| ||||| | |||||| | |||||||||||||| |||||| |
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|
| T |
49993113 |
tcattttttcaaacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagag |
49993014 |
T |
|
| Q |
363 |
gattcctttgt |
373 |
Q |
| |
|
||||| ||||| |
|
|
| T |
49993013 |
gattcttttgt |
49993003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 2862147 - 2862258
Alignment:
| Q |
85 |
tttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcaggacagtataaatttgg |
184 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| | ||||||||| ||||||||| | || || ||||||| ||||| |
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|
| T |
2862147 |
tttcagtgagtgttggagtgatgaattttgttggttgttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttgg |
2862246 |
T |
|
| Q |
185 |
tggaaggagtgg |
196 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2862247 |
aggtaggagtgg |
2862258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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