View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3191_low_2 (Length: 523)

Name: NF3191_low_2
Description: NF3191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3191_low_2
NF3191_low_2
[»] chr3 (5 HSPs)
chr3 (10-505)||(32950105-32950599)
chr3 (29-98)||(10069810-10069879)
chr3 (21-70)||(30432669-30432718)
chr3 (37-81)||(10069667-10069711)
chr3 (42-74)||(34298996-34299028)
[»] chr2 (2 HSPs)
chr2 (24-82)||(12120040-12120098)
chr2 (29-100)||(14780092-14780163)
[»] chr7 (4 HSPs)
chr7 (37-94)||(36443389-36443446)
chr7 (25-85)||(33529598-33529658)
chr7 (25-71)||(26728970-26729016)
chr7 (55-96)||(33952346-33952387)
[»] chr1 (2 HSPs)
chr1 (255-302)||(1470022-1470070)
chr1 (255-302)||(1476679-1476727)


Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 505
Target Start/End: Complemental strand, 32950599 - 32950105
Alignment:
Q  10 ataatacttagttggtcctttaacttgttttaaaagttaagtttgatcccttaactttaaaattgattaatttggtttcttaacttatgtagtagctcag 109  Q
    |||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950599 ataatacttagttggtcccttaacttgttctaaaaggtcagtttgatcccttaactttaaaattgattaatttggtttcttaacttatgtagtagctcag 32950500  T
Q  110 ctggtttgagttacagattaaaagagttgaaactcacggattcaaatttggatgaataagaaaaatactaatgttacaactaaatactaatctaacactt 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  32950499 ctggtttgagttacagattaaaagagttggaactcacggattcaaatttggatgaatcagaaaaatactaatgtcacaactaaatactaatctgacactt 32950400  T
Q  210 atgtaagttagtgcaatttgataccttaacatatgaatatgacattatattttcataaattagggatcaaattgtgttaacttacctaagttaagaaatc 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32950399 atgtaagttagtgcaacttgataccttaacatatgaatatgacattatattttcataaattagggatcaaattgtgttaacttacctaagttaagaaacc 32950300  T
Q  310 aaattgacatgtttgaaagttaagggatcgatttgattgttttgaagttaagaggatcaaattgaacttttaaaataaattaggacaccaaaagagatat 409  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32950299 aaattgacatgtttgaaagttaagggaccgatttgattgttttgaagttaagaggatcaaattgaacttttaaaataaattaggaca-caaaagagatat 32950201  T
Q  410 ttaatccaaaaacaatatgtcgattgttaatacaaactttcaagcctcaaggggtcacaaatcactttctggccattgtcctcaaccatttgaagg 505  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950200 ttaatccaaaaacgatatgtcgattgttaatacaaactttcaagcctcaaggggtcacaaatcactttctggccattgtcctcaaccatttgaagg 32950105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 10069879 - 10069810
Alignment:
Q  29 ttaacttgttttaaaagttaagtttgatcccttaactttaaaattgattaatttggtttcttaacttatg 98  Q
    ||||||| ||||||||||| |||||| || ||  |||| ||||||| | |||||||| ||||||||||||    
T  10069879 ttaacttattttaaaagtttagtttggtcactacacttaaaaattgctcaatttggtctcttaacttatg 10069810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 30432718 - 30432669
Alignment:
Q  21 ttggtcctttaacttgttttaaaagttaagtttgatcccttaactttaaa 70  Q
    ||||||||||||||| |||| ||| || | ||||||||||||||||||||    
T  30432718 ttggtcctttaacttatttttaaatttcattttgatcccttaactttaaa 30432669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 10069667 - 10069711
Alignment:
Q  37 ttttaaaagttaagtttgatcccttaactttaaaattgattaatt 81  Q
    |||||||| || |||||||||||||||||||||||  ||||||||    
T  10069667 ttttaaaaattcagtttgatcccttaactttaaaaccgattaatt 10069711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 34299028 - 34298996
Alignment:
Q  42 aaagttaagtttgatcccttaactttaaaattg 74  Q
    |||||| ||||||||||||||||||||||||||    
T  34299028 aaagttcagtttgatcccttaactttaaaattg 34298996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 12120098 - 12120040
Alignment:
Q  24 gtcctttaacttgttttaaaagttaagtttgatcccttaactttaaaattgattaattt 82  Q
    ||||||||| || ||||||||||| | |||||||| |||||||||||||||||||||||    
T  12120098 gtcctttaatttattttaaaagtttactttgatcctttaactttaaaattgattaattt 12120040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 14780163 - 14780092
Alignment:
Q  29 ttaacttgttttaaaagttaagtttgatcccttaactttaaaattgattaatttggtttcttaacttatgta 100  Q
    ||||||| || |||||||| ||||| | |||||||||| |||||   |||||||||| ||||||||||||||    
T  14780163 ttaacttattgtaaaagttcagtttaaccccttaacttcaaaatcagttaatttggtctcttaacttatgta 14780092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 36443446 - 36443389
Alignment:
Q  37 ttttaaaagttaagtttgatcccttaactttaaaattgattaatttggtttcttaact 94  Q
    ||||||| ||| ||||||||| ||||||||||||||| |||||||| || ||||||||    
T  36443446 ttttaaatgtttagtttgatcacttaactttaaaatttattaatttagtctcttaact 36443389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 33529598 - 33529658
Alignment:
Q  25 tcctttaacttgttttaaaagttaagtttgatcccttaactttaaaattgattaatttggt 85  Q
    ||||||||||| |||||||| ||| ||| | ||||||||||||||||| | ||||||||||    
T  33529598 tcctttaacttattttaaaaattatgttcggtcccttaactttaaaatagtttaatttggt 33529658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 26729016 - 26728970
Alignment:
Q  25 tcctttaacttgttttaaaagttaagtttgatcccttaactttaaaa 71  Q
    ||||||||||| ||||||||||| |||||  ||||||||||||||||    
T  26729016 tcctttaacttattttaaaagtttagtttagtcccttaactttaaaa 26728970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 33952387 - 33952346
Alignment:
Q  55 atcccttaactttaaaattgattaatttggtttcttaactta 96  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  33952387 atcccttaactttaaaatcaattaatttggtctcttaactta 33952346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 1470022 - 1470070
Alignment:
Q  255 tatattttcataaatta-gggatcaaattgtgttaacttacctaagtta 302  Q
    ||||||||||||||||| |||| ||| |||||||||||||| |||||||    
T  1470022 tatattttcataaattaagggaccaagttgtgttaacttacataagtta 1470070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 1476679 - 1476727
Alignment:
Q  255 tatattttcataaatta-gggatcaaattgtgttaacttacctaagtta 302  Q
    ||||||||||||||||| |||| ||| |||||||||||||| |||||||    
T  1476679 tatattttcataaattaagggaccaagttgtgttaacttacataagtta 1476727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University