View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3191_low_4 (Length: 239)
Name: NF3191_low_4
Description: NF3191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3191_low_4 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 8379 - 8218
Alignment:
| Q |
25 |
aaggtttgcaagatatgaaataggtaggaatgcaaataaatgaaataatagttatggttttcaattaaagaagatttaagtcagaggttccaggtttgat |
124 |
Q |
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| T |
8379 |
aaggtttgcaagatatgaaataggtaggaatgcaaataaatgaaataatagttatggttttcaat-aaagaagatttaagtcagaggttccagatttgat |
8281 |
T |
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| Q |
125 |
aaatgaaaactaacattatccccttccctcgaacaacttactaacaattaacatttgcatatc |
187 |
Q |
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| T |
8280 |
caatgaaaactaacattatccccttcccttgaacaacttactaacaattaacatttgcctatc |
8218 |
T |
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Target: scaffold0050; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 8199 - 8166
Alignment:
| Q |
206 |
cataactaaggtgaaatgaatgagtggaagaaat |
239 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
8199 |
cataacaaaggtgaaatgaatgagtggaagaaat |
8166 |
T |
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