View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3193_high_8 (Length: 231)
Name: NF3193_high_8
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3193_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 18728906 - 18728722
Alignment:
| Q |
18 |
acgtggtgttcctttttaaagtccgttaagaaacatggcatccataagaataagagagaaaagcttaaaacttactgcattcatgatagtagaaatgagt |
117 |
Q |
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| T |
18728906 |
acgtggtgttcctttttaaagtccgttaagaaacatggcatccataa--------------agcttaaaacttactgtattcatgatagtagaaatgagt |
18728821 |
T |
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| Q |
118 |
gaatatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgtccacgcagttcggctaatggtgcattcctcggcaagtataa |
216 |
Q |
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| T |
18728820 |
caatatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgtccacgcagttcggctaatggtgcattcctcagcaagtataa |
18728722 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 39129565 - 39129490
Alignment:
| Q |
121 |
tatagaagtttaaaagaaacgaaaaaattgcatgacaatgagacacaatctttgtccacgcagttcggctaatggtgc |
198 |
Q |
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| T |
39129565 |
tatagaagtataaaagaaaccaaaa--ttgcaagacaatgagacacagtctttgttcacgcagtttgacaaatggtgc |
39129490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 35416090 - 35416130
Alignment:
| Q |
42 |
gttaagaaacatggcatccataagaataagagagaaaagctt |
83 |
Q |
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| T |
35416090 |
gttaagaaacatggcatccataaaaat-agagagaaaagctt |
35416130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 23849910 - 23849866
Alignment:
| Q |
154 |
gacaatgagacacaatctttgtccacgcagttcggctaatggtgc |
198 |
Q |
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| T |
23849910 |
gacaatgagacatgatctttgttcacgcagttcggccaatggtgc |
23849866 |
T |
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