View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3193_high_9 (Length: 227)

Name: NF3193_high_9
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3193_high_9
NF3193_high_9
[»] chr4 (15 HSPs)
chr4 (7-219)||(7970323-7970535)
chr4 (102-166)||(44719398-44719462)
chr4 (102-166)||(47372832-47372896)
chr4 (102-155)||(37042701-37042754)
chr4 (103-166)||(7681948-7682011)
chr4 (102-166)||(29209212-29209276)
chr4 (102-166)||(41192242-41192306)
chr4 (100-151)||(20105553-20105604)
chr4 (99-166)||(38903752-38903819)
chr4 (99-166)||(42639054-42639121)
chr4 (74-151)||(2557680-2557758)
chr4 (169-223)||(30298910-30298964)
chr4 (169-223)||(30327778-30327832)
chr4 (103-140)||(48174131-48174168)
chr4 (102-142)||(40018226-40018266)
[»] chr6 (6 HSPs)
chr6 (102-166)||(32945429-32945493)
chr6 (104-166)||(1747984-1748046)
chr6 (102-155)||(413275-413328)
chr6 (102-166)||(6293429-6293493)
chr6 (103-155)||(7267423-7267475)
chr6 (167-223)||(17841630-17841686)
[»] chr3 (11 HSPs)
chr3 (107-166)||(55244459-55244518)
chr3 (92-167)||(41842550-41842625)
chr3 (102-166)||(42026573-42026637)
chr3 (99-166)||(11284169-11284236)
chr3 (98-152)||(41971303-41971357)
chr3 (104-166)||(46140588-46140650)
chr3 (182-223)||(33359738-33359779)
chr3 (105-142)||(39535440-39535477)
chr3 (171-227)||(6525717-6525773)
chr3 (165-197)||(36515012-36515044)
chr3 (102-142)||(46367424-46367464)
[»] chr7 (7 HSPs)
chr7 (104-163)||(6807388-6807447)
chr7 (102-166)||(22174181-22174245)
chr7 (168-227)||(25791616-25791675)
chr7 (74-140)||(21078124-21078190)
chr7 (104-141)||(39812144-39812181)
chr7 (167-227)||(21139030-21139090)
chr7 (167-227)||(32308082-32308142)
[»] chr1 (14 HSPs)
chr1 (104-163)||(17815663-17815722)
chr1 (102-155)||(38869074-38869127)
chr1 (103-155)||(7124333-7124385)
chr1 (104-166)||(40920568-40920630)
chr1 (102-166)||(6025786-6025850)
chr1 (102-141)||(14225873-14225912)
chr1 (99-142)||(30396763-30396806)
chr1 (99-150)||(50257767-50257818)
chr1 (102-148)||(38877380-38877426)
chr1 (182-227)||(9690309-9690354)
chr1 (102-155)||(10569108-10569161)
chr1 (102-142)||(2545136-2545176)
chr1 (183-227)||(36878439-36878483)
chr1 (102-166)||(42501289-42501353)
[»] chr2 (15 HSPs)
chr2 (102-166)||(8197578-8197642)
chr2 (102-166)||(8202338-8202402)
chr2 (103-154)||(16626002-16626053)
chr2 (103-166)||(37470171-37470234)
chr2 (100-154)||(26784375-26784429)
chr2 (99-151)||(6219161-6219213)
chr2 (100-166)||(19336928-19336994)
chr2 (104-166)||(32402681-32402743)
chr2 (185-227)||(37411281-37411323)
chr2 (102-155)||(8187299-8187352)
chr2 (98-155)||(19235017-19235074)
chr2 (105-154)||(29159286-29159335)
chr2 (99-167)||(9496046-9496114)
chr2 (102-142)||(19224986-19225026)
chr2 (98-166)||(33287602-33287670)
[»] chr5 (14 HSPs)
chr5 (102-155)||(4026365-4026418)
chr5 (95-140)||(38657050-38657095)
chr5 (102-166)||(18350939-18351003)
chr5 (99-150)||(683735-683786)
chr5 (74-137)||(29922494-29922557)
chr5 (102-155)||(2645182-2645235)
chr5 (105-142)||(36123222-36123259)
chr5 (99-140)||(41894280-41894321)
chr5 (191-227)||(3966489-3966525)
chr5 (167-227)||(6035445-6035505)
chr5 (191-227)||(11685925-11685961)
chr5 (102-154)||(12576897-12576949)
chr5 (184-224)||(27144442-27144482)
chr5 (167-223)||(43001762-43001818)
[»] scaffold0392 (1 HSPs)
scaffold0392 (99-155)||(6806-6862)
[»] chr8 (10 HSPs)
chr8 (102-166)||(23492215-23492279)
chr8 (102-153)||(12611691-12611742)
chr8 (108-166)||(11733928-11733986)
chr8 (104-141)||(26642708-26642745)
chr8 (122-166)||(3638390-3638434)
chr8 (105-141)||(26639232-26639268)
chr8 (104-140)||(27480168-27480204)
chr8 (167-227)||(31109555-31109615)
chr8 (99-127)||(33118206-33118234)
chr8 (102-166)||(39967536-39967600)
[»] scaffold0180 (1 HSPs)
scaffold0180 (104-166)||(25482-25544)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 7970323 - 7970535
Alignment:
Q  7 gaggtaatcatgttccaagtacttttatagactaaatacagacccttctcccgacaacaaccaactgaccaaggcttatccaatcaaatgaagttggcta 106  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  7970323 gaggtaatcatgttccaaatacttttatagactaaatacagacccttctcccgacaacaaccaactgaccacggcttatccaatcaaatggagttggcta 7970422  T
Q  107 catggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaactatgaagcacagatccggacacagacactgacatgctga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7970423 catggatcaaacgacaccataatgttttatcatatactatatttctatctaactcattaactatgaagcacagatccggacacagacactgacatgctga 7970522  T
Q  207 caccgccaataat 219  Q
    |||||||||||||    
T  7970523 caccgccaataat 7970535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 44719398 - 44719462
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||||||||||||| | ||| ||||||  ||||||||||| |||||||||    
T  44719398 ggctacatggatcaaacgacaccataatgctctattatataccgtatttctatctaactcattaa 44719462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 47372896 - 47372832
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||||||| |||||||||| ||| |||||| |||||||||||  |||||||||    
T  47372896 ggctacatggatcaaacgactccataatgttctataatataccatatttctatccaactcattaa 47372832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 37042701 - 37042754
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    ||||||||||||||||||||||||||||||| ||||| ||||  ||||||||||    
T  37042701 ggctacatggatcaaacgacaccataatgttctatcaaataccgtatttctatc 37042754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 7681948 - 7682011
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||  | |||||||  |||||||||| |||||||||||| |||||||||    
T  7681948 gctacatggatcaaacgatgcaataatgtcctatcatataccatatttctatctaactcattaa 7682011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 29209212 - 29209276
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||| |||||||| || |||||||| | |||||||||| |||||||||||  |||||||||    
T  29209212 ggctacattgatcaaacaacgccataatgctctatcatataccatatttctatccaactcattaa 29209276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 41192306 - 41192242
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||| |||||  |||||||||| || ||||||| |||||||||||  |||||||||    
T  41192306 ggctacatggatcgaacgaagccataatgttctaccatataccatatttctatccaactcattaa 41192242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 20105553 - 20105604
Alignment:
Q  100 ttggctacatggatcaaacgacaccataatgttttatcatatactatatttc 151  Q
    |||||||||||||||||| ||| |||||||||  |||||||||| |||||||    
T  20105553 ttggctacatggatcaaatgacgccataatgtcctatcatataccatatttc 20105604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 38903752 - 38903819
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||||||  |||||||||| | |||||||  |||| ||||||  |||||||||    
T  38903752 gttggctacatggatcaaacgatgccataatgttatgtcatatatcatatctctatcaaactcattaa 38903819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 42639054 - 42639121
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||| || | ||||| |||||||||| ||||| |||| |||||||||||  |||||||||    
T  42639054 gttggctacatgaattacacgacgccataatgttctatcaaataccatatttctatccaactcattaa 42639121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 2557680 - 2557758
Alignment:
Q  74 accaaggcttatccaatcaaatgaagttggctacatggatcaaacgacacc-ataatgttttatcatatactatatttc 151  Q
    |||||| ||||||| |  ||||| ||||||||||||||||||||  ||||| |||||||| ||||||| || |||||||    
T  2557680 accaagccttatcccactaaatggagttggctacatggatcaaattacaccaataatgttctatcataaaccatatttc 2557758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 30298910 - 30298964
Alignment:
Q  169 atgaagcacagatccggacacagacactgacatgctgacaccgccaataatttga 223  Q
    ||||||||||||| ||||||| |||||||||| || ||||| || ||||||||||    
T  30298910 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttga 30298964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 30327778 - 30327832
Alignment:
Q  169 atgaagcacagatccggacacagacactgacatgctgacaccgccaataatttga 223  Q
    ||||||||||||| ||||||| |||||||||| || ||||| || ||||||||||    
T  30327778 atgaagcacagatacggacacggacactgacacgccgacacagctaataatttga 30327832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 48174131 - 48174168
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcata 140  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  48174131 gctacatggatcaaatgacgccataatgttttatcata 48174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 40018226 - 40018266
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatata 142  Q
    |||||||||||||||||||| || ||||||| |||||||||    
T  40018226 ggctacatggatcaaacgacgccgtaatgttctatcatata 40018266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 32945493 - 32945429
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  32945493 ggctacatggatcaaacgacaccataatgttctatcatataaaatatttctatctaactcattaa 32945429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 1747984 - 1748046
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||  | ||||||| ||||||||||||||||||||||  |||||||||    
T  1747984 ctacatggatcaaacgacgtcgtaatgttctatcatatactatatttctatccaactcattaa 1748046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 413328 - 413275
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||| ||||||| ||||| ||||| || |||||||||| |||||||||||    
T  413328 ggctacattgatcaaatgacactataatcttctatcatataccatatttctatc 413275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 6293429 - 6293493
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||| || ||||||   |||||||| | |||||||||| |||||||||||| |||||||||    
T  6293429 ggctacattgaccaaacgttgccataatgctctatcatataccatatttctatctaactcattaa 6293493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 7267423 - 7267475
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||||||| |||||||||  ||||||||  |||||| ||||    
T  7267423 gctacatggatcaaacgacatcataatgttgcatcatatatcatatttttatc 7267475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 17841686 - 17841630
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttga 223  Q
    ||||||||||| ||| ||||||| |||||||||| || ||||| || ||||||||||    
T  17841686 ctatgaagcactgatacggacacggacactgacacgccgacacagctaataatttga 17841630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 55244518 - 55244459
Alignment:
Q  107 catggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||  |||||||||    
T  55244518 catggatcaaacgacaccataatgttctatcatataccatatttctatccaactcattaa 55244459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 41842550 - 41842625
Alignment:
Q  92 aaatgaagttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaac 167  Q
    |||||| |||| ||||||||||||||  ||||||||||||| ||||| | || ||||||| |||| ||||||||||    
T  41842550 aaatgaggttgactacatggatcaaattacaccataatgttctatcaaaaaccatatttcaatctaactcattaac 41842625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 42026573 - 42026637
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||| ||| ||||||  || |||||||||| |||||||||| |||||||||||| |||||||||    
T  42026573 ggctaaatgaatcaaataacgccataatgttctatcatataccatatttctatctaactcattaa 42026637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 11284236 - 11284169
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||||||  | ||||||||  ||||||||| |||||| ||||  |||||||||    
T  11284236 gttggctacatggatcaaacgatgcaataatgttcaatcatataccatatttatatccaactcattaa 11284169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 41971303 - 41971357
Alignment:
Q  98 agttggctacatggatcaaacgacaccataatgttttatcatatactatatttct 152  Q
    ||||||||||||||||||||| ||  ||||||||| |||||||||  ||||||||    
T  41971303 agttggctacatggatcaaacaacgtcataatgttctatcatatatcatatttct 41971357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 46140650 - 46140588
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||| || |||||||||| |||| ||  |||||||||||||  |||||||||    
T  46140650 ctacatggatcaaacaactccataatgttctatcgtaagctatatttctatcaaactcattaa 46140588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 33359738 - 33359779
Alignment:
Q  182 ccggacacagacactgacatgctgacaccgccaataatttga 223  Q
    ||||||||||||||||||| |||||||| || ||||||||||    
T  33359738 ccggacacagacactgacacgctgacacagctaataatttga 33359779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 39535440 - 39535477
Alignment:
Q  105 tacatggatcaaacgacaccataatgttttatcatata 142  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  39535440 tacatggatcaaacgccaccataatgttctatcatata 39535477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 6525773 - 6525717
Alignment:
Q  171 gaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||| ||| |||||||  |||||||||||  |||||||| ||||||||||||||    
T  6525773 gaagcacggatacggacacgtacactgacatgtcgacaccgctaataatttgagaaa 6525717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 36515012 - 36515044
Alignment:
Q  165 aactatgaagcacagatccggacacagacactg 197  Q
    ||||||||||||||||| |||||||||||||||    
T  36515012 aactatgaagcacagatacggacacagacactg 36515044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 46367424 - 46367464
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatata 142  Q
    ||||||||||||||||||||  ||||||||| |||||||||    
T  46367424 ggctacatggatcaaacgacgtcataatgttctatcatata 46367464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 6807447 - 6807388
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcat 163  Q
    |||||||||||||||||| |||||||||| ||||||| || |||||||||||| ||||||    
T  6807447 ctacatggatcaaacgacgccataatgttctatcatacaccatatttctatctaactcat 6807388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 22174245 - 22174181
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||| || |||||||||| ||||| |||| |||||||||||| | |||||||    
T  22174245 ggctacatggatcaaacaacgccataatgttctatcacataccatatttctatctaattcattaa 22174181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 25791616 - 25791675
Alignment:
Q  168 tatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    |||||||||| ||| |||||||||||||||||| || |||||||| ||| ||||||||||    
T  25791616 tatgaagcacggatacggacacagacactgacacgccgacaccgctaattatttgagaaa 25791675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 21078190 - 21078124
Alignment:
Q  74 accaaggcttatccaatcaaatgaagttggctacatggatcaaacgacaccataatgttttatcata 140  Q
    |||||| ||||||| |  ||||||||| |||||||||||||||| ||| |||||||||| |||||||    
T  21078190 accaagccttatcccactaaatgaagtcggctacatggatcaaatgacgccataatgttctatcata 21078124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 39812181 - 39812144
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatat 141  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  39812181 ctacatggatcaaacgacatcataatgttctatcatat 39812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 21139090 - 21139030
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||| ||| | ||||||||||||||||||   ||||||  ||||||||||||||    
T  21139090 ctatgaagcacggatacagacacagacactgacatgtcaacaccgttaataatttgagaaa 21139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 32308082 - 32308142
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    |||||||||||| || || |||  |||||||||| || |||||||| ||||||||||||||    
T  32308082 ctatgaagcacaaatacgaacatggacactgacacgccgacaccgctaataatttgagaaa 32308142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 17815722 - 17815663
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcat 163  Q
    |||||||||||||||||||||| |||| | |||||||||| |||||||||||| ||||||    
T  17815722 ctacatggatcaaacgacaccaaaatgctctatcatataccatatttctatctaactcat 17815663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 38869127 - 38869074
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||| ||||||    
T  38869127 ggctacatggatcaaacgacgccataatgttctatcatataccatatatctatc 38869074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 7124385 - 7124333
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  7124385 gctacatggatcaaacgacaccataatgctctatcctataccatatttctatc 7124333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 40920568 - 40920630
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||| |||||| ||||||||||| || |||||||||| |||||||||||  |||||||||    
T  40920568 ctacatgaatcaaaagacaccataatattctatcatataccatatttctatccaactcattaa 40920630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 6025850 - 6025786
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||| ||| |||| ||||| ||||| |||| |||||||||||  |||||||||    
T  6025850 ggctacatggatcaaatgacgccatcatgttctatcagataccatatttctatccaactcattaa 6025786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 14225873 - 14225912
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatat 141  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  14225873 ggctacatggatcaaacgacaccatactgttctatcatat 14225912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 30396763 - 30396806
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatata 142  Q
    |||||||||| |||||||||| |||||||||||| |||||||||    
T  30396763 gttggctacacggatcaaacgccaccataatgttctatcatata 30396806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 50257818 - 50257767
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatattt 150  Q
    |||||||||||||||||||  ||||||||||||| ||||||| || ||||||    
T  50257818 gttggctacatggatcaaattacaccataatgttctatcataaaccatattt 50257767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 38877380 - 38877426
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatat 148  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||||||    
T  38877380 ggctacatggatcaaatgacgccataatgttctatcgtatactatat 38877426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 9690354 - 9690309
Alignment:
Q  182 ccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||||||||||| ||||||||||| |||||  |||||||    
T  9690354 ccggacacagacactgacacgctgacaccgctaataaactgagaaa 9690309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 10569108 - 10569161
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||| || |  |||||||| |||||||||| |||||||||||    
T  10569108 ggctacatggatcaaatgatattataatgttctatcatatacgatatttctatc 10569161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 2545136 - 2545176
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatata 142  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  2545136 ggctaaattgatcaaacgacaccataatgttctatcatata 2545176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 36878439 - 36878483
Alignment:
Q  183 cggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    |||||| ||||||||||| || |||||||| ||||||||||||||    
T  36878439 cggacatagacactgacacgccgacaccgctaataatttgagaaa 36878483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 42501353 - 42501289
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||| ||||||| |  ||||||| |||||||| | |||||||||||  |||||||||    
T  42501353 ggctacatggattaaacgacgctgtaatgttctatcatattccatatttctatccaactcattaa 42501289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 8197578 - 8197642
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||||||| ||||||| || |||||||||  |||||||||||  |||||||||    
T  8197578 ggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaa 8197642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 8202338 - 8202402
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||||||| ||||||| || |||||||||  |||||||||||  |||||||||    
T  8202338 ggctacatggatcaaacgacgccataatattctatcatatatcatatttctatccaactcattaa 8202402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 16626002 - 16626053
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcatatactatatttctat 154  Q
    |||||||||||||||||||||||||| ||| ||||| |||| ||||||||||    
T  16626002 gctacatggatcaaacgacaccataacgttctatcaaataccatatttctat 16626053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 37470171 - 37470234
Alignment:
Q  103 gctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||||||| ||||||||||||| |||||||| | ||||||| |||  |||||||||    
T  37470171 gctacatggatcaaactacaccataatgttctatcatatgccatatttcgatccaactcattaa 37470234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 26784375 - 26784429
Alignment:
Q  100 ttggctacatggatcaaacgacaccataatgttttatcatatactatatttctat 154  Q
    ||||||||||||||||||  | |||| ||||||||||||||||| ||||||||||    
T  26784375 ttggctacatggatcaaattaaaccaaaatgttttatcatataccatatttctat 26784429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 6219213 - 6219161
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttc 151  Q
    |||||||||||||||||||  ||||||||||||| ||||||| || |||||||    
T  6219213 gttggctacatggatcaaattacaccataatgttctatcataaaccatatttc 6219161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 19336928 - 19336994
Alignment:
Q  100 ttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||  || |||||||||| ||||||| || ||||||| |||  |||||||||    
T  19336928 ttggctacatggatcaaattacgccataatgttctatcataaaccatatttcgatccaactcattaa 19336994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 32402743 - 32402681
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||| ||||||||| || ||||||||||| ||||||||||  ||||||||||  |||||||||    
T  32402743 ctacgtggatcaaatgaaaccataatgttctatcatataccttatttctatccaactcattaa 32402681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 37411323 - 37411281
Alignment:
Q  185 gacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||| ||||||||| |||||||| ||||||||||||||    
T  37411323 gacacagacgctgacatgccgacaccgctaataatttgagaaa 37411281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 8187352 - 8187299
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    ||||||||||||||||| ||||||||||||| ||| | |||| ||| |||||||    
T  8187352 ggctacatggatcaaacaacaccataatgttgtattaaataccatacttctatc 8187299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 19235017 - 19235074
Alignment:
Q  98 agttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||| |||||||  || |||||| ||||| |||| |||||||||||    
T  19235017 agttggctacatggattaaacgacgacagaatgttctatcaaataccatatttctatc 19235074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 29159335 - 29159286
Alignment:
Q  105 tacatggatcaaacgacaccataatgttttatcatatactatatttctat 154  Q
    ||||||||||||||||| ||||||| |||||||| |||  ||||||||||    
T  29159335 tacatggatcaaacgacgccataatattttatcaaatatcatatttctat 29159286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 9496114 - 9496046
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaac 167  Q
    |||||||||||||||||||  || |||||||||| ||||||| || ||||||  |||  ||||||||||    
T  9496114 gttggctacatggatcaaattacgccataatgttctatcataaaccatatttggatccaactcattaac 9496046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 19225026 - 19224986
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatata 142  Q
    ||||||||||||||||||||| |||| |||| |||||||||    
T  19225026 ggctacatggatcaaacgacatcatagtgttctatcatata 19224986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 33287670 - 33287602
Alignment:
Q  98 agttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||| ||||||||| |   ||||||||| ||||||| || ||||||| |||| |||||||||    
T  33287670 agttggctacaaggatcaaactatgtcataatgttctatcataaaccatatttcgatctaactcattaa 33287602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 4026365 - 4026418
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    ||||||||||||||||||||  |||||||||||||  ||||||||||| |||||    
T  4026365 ggctacatggatcaaacgacgtcataatgttttattgtatactatattcctatc 4026418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 38657095 - 38657050
Alignment:
Q  95 tgaagttggctacatggatcaaacgacaccataatgttttatcata 140  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||||    
T  38657095 tgaagttggctacatgaatcaaacgacatcataatgttctatcata 38657050  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 18350939 - 18351003
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||||||  ||||||||| || || |||| |||||||||||  |||||||||    
T  18350939 ggctacatggatcaaacgacgtcataatgttctaacaaataccatatttctatccaactcattaa 18351003  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 683735 - 683786
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatattt 150  Q
    |||||||||||||||||||| ||| ||||||||| ||||||| || ||||||    
T  683735 gttggctacatggatcaaactacaacataatgttctatcataaaccatattt 683786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 29922557 - 29922494
Alignment:
Q  74 accaaggcttatccaatcaaatgaagttggctacatggatcaaacgacaccataatgttttatc 137  Q
    |||||||||||||| | ||| ||| |||||||||||||||||||  || |||||||||| ||||    
T  29922557 accaaggcttatcccaccaagtgaggttggctacatggatcaaattacgccataatgttctatc 29922494  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 2645235 - 2645182
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||||||  | |||||||||||||| |||| | |||||||||    
T  2645235 ggctacatggatcaaacgatgctataatgttttatcaaataccacatttctatc 2645182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 142
Target Start/End: Original strand, 36123222 - 36123259
Alignment:
Q  105 tacatggatcaaacgacaccataatgttttatcatata 142  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  36123222 tacatggatcaaacgccaccataatgttctatcatata 36123259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 41894321 - 41894280
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcata 140  Q
    |||||||||||||||||||  ||||||||||||| |||||||    
T  41894321 gttggctacatggatcaaattacaccataatgttgtatcata 41894280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 3966489 - 3966525
Alignment:
Q  191 gacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  3966489 gacactgacatgccgacaccgctaataatttgagaaa 3966525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 6035445 - 6035505
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||| |||   |||| ||||||||||| || |||||||| ||||||||||||||    
T  6035445 ctatgaagcacggatatagacaaagacactgacacgccgacaccgctaataatttgagaaa 6035505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 11685925 - 11685961
Alignment:
Q  191 gacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  11685925 gacactgacatgccgacaccgctaataatttgagaaa 11685961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 12576897 - 12576949
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctat 154  Q
    ||||||||| || ||| |||||||||||| | |||||||||| ||||||||||    
T  12576897 ggctacatgtataaaatgacaccataatggtctatcatataccatatttctat 12576949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 27144442 - 27144482
Alignment:
Q  184 ggacacagacactgacatgctgacaccgccaataatttgag 224  Q
    ||||||||||||||||| || |||||||| |||||||||||    
T  27144442 ggacacagacactgacacgccgacaccgctaataatttgag 27144482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 43001762 - 43001818
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttga 223  Q
    ||||||||||| ||| ||||||| ||||||||||||  ||||| || ||||||||||    
T  43001762 ctatgaagcacggatacggacacggacactgacatgtcgacactgctaataatttga 43001818  T

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Target: scaffold0392 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 6806 - 6862
Alignment:
Q  99 gttggctacatggatcaaacgacaccataatgttttatcatatactatatttctatc 155  Q
    |||||||||||||||||||  |  |||||||||| |||||||||| |||||||||||    
T  6806 gttggctacatggatcaaattatgccataatgttatatcatataccatatttctatc 6862  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 23492279 - 23492215
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||||||||| ||| ||||||||| |||| |||||||||  |||||||||||  |||||||||    
T  23492279 ggctacatggattaaatgacaccatagtgttctatcatatatcatatttctatccaactcattaa 23492215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 12611742 - 12611691
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttcta 153  Q
    ||||||||||||||||||||||||||| ||| || ||||||  |||||||||    
T  12611742 ggctacatggatcaaacgacaccataaagttctaacatatatcatatttcta 12611691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 11733986 - 11733928
Alignment:
Q  108 atggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||| ||||||||| |||||||| | ||||| |||| |||||||||||| |||||||||    
T  11733986 atggttcaaacgacgccataatgctctatcacataccatatttctatctaactcattaa 11733928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 26642745 - 26642708
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatat 141  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  26642745 ctacatggatcaaacgacaccataatgatctatcatat 26642708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 3638390 - 3638434
Alignment:
Q  122 accataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||| ||||||||||||||||||| ||  |||||||||    
T  3638390 accataatgttctatcatatactatatttctgtccaactcattaa 3638434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 26639268 - 26639232
Alignment:
Q  105 tacatggatcaaacgacaccataatgttttatcatat 141  Q
    |||||||||||||||||||||||||| | ||||||||    
T  26639268 tacatggatcaaacgacaccataatgatctatcatat 26639232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Complemental strand, 27480204 - 27480168
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcata 140  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  27480204 ctacatggatcaaactacaccataatgttctatcata 27480168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 31109615 - 31109555
Alignment:
Q  167 ctatgaagcacagatccggacacagacactgacatgctgacaccgccaataatttgagaaa 227  Q
    ||||||||||| |||  |||||| |||||||||| || |||||||  ||||||||||||||    
T  31109615 ctatgaagcactgatatggacacggacactgacacgccgacaccgttaataatttgagaaa 31109555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 33118206 - 33118234
Alignment:
Q  99 gttggctacatggatcaaacgacaccata 127  Q
    |||||||||||||||||||||||||||||    
T  33118206 gttggctacatggatcaaacgacaccata 33118234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 39967536 - 39967600
Alignment:
Q  102 ggctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    ||||||||||||||||| || |||||||||| || |||| ||||||| || |||  |||||||||    
T  39967536 ggctacatggatcaaactacgccataatgttctaacataaactatatctcaatccaactcattaa 39967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 25482 - 25544
Alignment:
Q  104 ctacatggatcaaacgacaccataatgttttatcatatactatatttctatctgactcattaa 166  Q
    |||||| ||||||||||  ||||||||||||||||||||   ||||||||||  |||||||||    
T  25482 ctacatagatcaaacgaagccataatgttttatcatataacttatttctatccaactcattaa 25544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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