View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3193_low_1 (Length: 973)
Name: NF3193_low_1
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3193_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 575
Target Start/End: Complemental strand, 38814924 - 38814350
Alignment:
| Q |
1 |
cacttgctgcaagttttatctgagaggtttttccaggcatatgctttttaagatgaatgataagatgtgtttagttccaatgtgaaattcattgaatatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814924 |
cacttgctgcaagttttatctgagaggtatttccaggcatatgctttttaagttggatgataagatgtgtttagttccaatgtgaaattcattgaatatt |
38814825 |
T |
|
| Q |
101 |
tggctatttattaaccctaattgattgtttgatccaattagccaacatcaccttatgggatgatagtagttgtttgttttaatgagtttctcatgccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814824 |
tggctatttattaaccctaattgattgtttgatccaattagccaacatcaccttatgggatgatagtagttgtttgttttaatgagtttctcatgccttg |
38814725 |
T |
|
| Q |
201 |
taaatttactccattaattgtcagggaagaaccagtacttctagacattcaacctgatgagctgcatgtgaaatttcaagatcccaatttcttggaggag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814724 |
taaatttactccattaattgtcagggaagaaccagtacttctagacattcaacctgatgagctgcatgtgaaatttcaagatcccaatttcttggaggag |
38814625 |
T |
|
| Q |
301 |
gcacagttgattgatgttcgagagcctgaagaagtgtatgctcctattttcatcaacttttaactagttttcaatcactgaaatggattcttgtatgatc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38814624 |
gcacagttgattgatgttcgagagcctgaagaagtgtatgctcctattttcatcaacttttaactagttttcaatcactgaaatgcattcttgtatgatc |
38814525 |
T |
|
| Q |
401 |
tgtatatgttcatttagtttaataccgttactacttagcatgttgagttagtgatgataagttgatgaggaaatgagcttgcacaaaagagaatatcaag |
500 |
Q |
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| T |
38814524 |
tgtatatgttcatttagtttaataccgttactacttagcatgttgagttagtgatgataagttgatgaggaaatgagcttgcacaaaagagaatatcaag |
38814425 |
T |
|
| Q |
501 |
ctgatctataattcactagaaagtattgagagcatttcaacgctaattcccttttgatatctcatggatatctgc |
575 |
Q |
| |
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| T |
38814424 |
ctgatctataattcactagaaagtattgagagcatttcaacgctaattcccttttgatatctcatggatatctgc |
38814350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 691 - 933
Target Start/End: Complemental strand, 38814235 - 38813993
Alignment:
| Q |
691 |
aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814235 |
aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga |
38814136 |
T |
|
| Q |
791 |
aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtctaagtttgaatagttagaagcctttgttttttgatgtttcagttcat |
890 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814135 |
aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtccaagtttgaatagttagaagcctttgttttttgatgtttcagttcat |
38814036 |
T |
|
| Q |
891 |
tcatctttattttgattttcaatattgaagctgaattagctgc |
933 |
Q |
| |
|
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| T |
38814035 |
tcatctttattttgattttcaatattgaagctgaattagctgc |
38813993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 38821160 - 38821032
Alignment:
| Q |
223 |
agggaagaaccagtacttctagacattcaacctgatgagctgcatgtgaaatttcaagatcccaatttcttggaggaggcacagttgattgatgttcgag |
322 |
Q |
| |
|
||||||||| | ||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||| ||||||||||||| |
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| T |
38821160 |
agggaagaatctgtatttcaagacattcaacctgatgagctgcatgtgaaacttcaagatcccaacttctcgaaggaggcacagttaattgatgttcgag |
38821061 |
T |
|
| Q |
323 |
agcctgaagaagtgtatgctcctattttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
38821060 |
agcctgaagaagtgtatgctcctattttc |
38821032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 691 - 854
Target Start/End: Complemental strand, 38820736 - 38820573
Alignment:
| Q |
691 |
aatgattctcgcatcatacacaggaccaccgcatctttgccaggatttacagttcttccccttcgacaatttggaacctgggggcctgaaataaattcga |
790 |
Q |
| |
|
|||||| ||| ||| ||||||||| || || |||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||| | | |
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| T |
38820736 |
aatgatactctcattatacacagggacaaagcgtctttgccaggatttatggttcttcccctccttcaatttggaacctgggtgcctgaaataaacacca |
38820637 |
T |
|
| Q |
791 |
aatttgatcttcaaaaggatacatatgttctggtaagcacaactttagcagtctaagtttgaat |
854 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||| ||| ||||||||||| |||||||||| |
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|
| T |
38820636 |
aattggatcttcaaaagaatacatatgttcttgtaagtacagctttagcagtccaagtttgaat |
38820573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 450 - 510
Target Start/End: Complemental strand, 38820949 - 38820887
Alignment:
| Q |
450 |
agtgatgataagttgatgaggaaatgagcttgcacaaa--agagaatatcaagctgatctata |
510 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||| |
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| T |
38820949 |
agtggtgataagttgatgaggataagagcttgcacaaaatagacaatatcaagctgatctata |
38820887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 38821324 - 38821252
Alignment:
| Q |
84 |
gaaattcattgaatatttggctattta--ttaaccctaattgattgtttgatccaattagccaacatcacctt |
154 |
Q |
| |
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|||||| ||||||||||||| ||||| | || ||| ||||||||||||||| |||||||||||| |||||| |
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| T |
38821324 |
gaaatttattgaatatttggttattttcgtaaatccttattgattgtttgatctaattagccaacaccacctt |
38821252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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