View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3193_low_10 (Length: 213)

Name: NF3193_low_10
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3193_low_10
NF3193_low_10
[»] chr3 (4 HSPs)
chr3 (1-198)||(47452311-47452511)
chr3 (7-97)||(11006372-11006462)
chr3 (11-97)||(11015939-11016025)
chr3 (7-89)||(11024947-11025029)
[»] chr4 (15 HSPs)
chr4 (3-98)||(7789666-7789761)
chr4 (1-95)||(48156831-48156925)
chr4 (1-98)||(7770981-7771078)
chr4 (1-94)||(7800218-7800311)
chr4 (1-94)||(7813061-7813154)
chr4 (1-97)||(7822547-7822643)
chr4 (1-96)||(7877299-7877394)
chr4 (1-96)||(7907904-7907999)
chr4 (1-98)||(7904609-7904706)
chr4 (1-94)||(45366625-45366718)
chr4 (1-96)||(49044633-49044728)
chr4 (3-65)||(7765231-7765293)
chr4 (1-97)||(33134230-33134326)
chr4 (3-59)||(45372463-45372519)
chr4 (1-89)||(48862827-48862915)
[»] chr8 (5 HSPs)
chr8 (1-68)||(12194908-12194975)
chr8 (1-68)||(12439336-12439403)
chr8 (1-68)||(12199914-12199981)
chr8 (1-68)||(12444342-12444409)
chr8 (1-60)||(15348477-15348536)
[»] chr5 (2 HSPs)
chr5 (1-50)||(29687676-29687725)
chr5 (1-53)||(29712873-29712925)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 47452311 - 47452511
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  47452311 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaccaagatctggattatcaattcaagaggtagatacaaga 47452410  T
Q  101 tctccgtctcaataagtct---tcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataatgaacaacttgcca 197  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47452411 tctccgtctcaataagtcttcctcctcctttaccaccgttctttgtcatcgttctggtcaacttgatttagttggtaggatgataatgaacaacttgcca 47452510  T
Q  198 t 198  Q
    |    
T  47452511 t 47452511  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 11006372 - 11006462
Alignment:
Q  7 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 97  Q
    |||||||||||| |||  |||||||| |||| ||| |||||||||||||||||||||| ||| || || ||||||||| |||| |||||||    
T  11006372 aaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagataca 11006462  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 11015939 - 11016025
Alignment:
Q  11 atgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 97  Q
    |||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || |||||||||||| |||| |||||||    
T  11015939 atgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 11016025  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 11024947 - 11025029
Alignment:
Q  7 aaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 89  Q
    |||||||||||| ||| ||| ||||| ||||  |||||||||||||| |||||||||| ||| || || ||||||||| ||||    
T  11024947 aaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgagg 11025029  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 7789761 - 7789666
Alignment:
Q  3 agaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaa 98  Q
    ||||||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||||| |||| |||| ||||||||    
T  7789761 agaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagatacaa 7789666  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 48156831 - 48156925
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagata 95  Q
    ||||||||||| |||||| ||| ||||||||| |||| ||||||||||||||| ||||  || ||||| || |||||||||||||| || |||||    
T  48156831 agagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagata 48156925  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 7771078 - 7770981
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaa 98  Q
    ||||||||||| |||||| ||| ||| ||||| | || ||||||||||||||||||||||| ||| || |||||||| | |||| |||| ||||||||    
T  7771078 agagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgaggcagatacaa 7770981  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7800311 - 7800218
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 94  Q
    |||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||||    
T  7800311 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7800218  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 7813154 - 7813061
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 94  Q
    |||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| ||| |||| ||||    
T  7813154 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggcagat 7813061  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7822643 - 7822547
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 97  Q
    |||||||||||||| ||| |||  |||||||| |||| |||| ||||||||||||||||||||| |||  |||||||||| | | |||| |||||||    
T  7822643 agagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatgatgaggcagataca 7822547  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7877394 - 7877299
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatac 96  Q
    ||||||||||||  |||| ||||||| ||||| |||| ||||||||||||| ||||||  | |||||| ||||| ||||||||| |||| ||||||    
T  7877394 agagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaagatac 7877299  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7907999 - 7907904
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatac 96  Q
    ||||||||||||||||||  ||   ||||||| |||  |||||||||||||||||||||||  ||||||||||  ||||||||| |||| ||||||    
T  7907999 agagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaagatac 7907904  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 7904706 - 7904609
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatacaa 98  Q
    |||||||||||| ||||| |||  || ||||| |||| |||||||||||| ||||||| || || ||| || || ||||||||| |||| ||||||||    
T  7904706 agagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacgaggaagatacaa 7904609  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 45366625 - 45366718
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagat 94  Q
    |||||||||||  ||||| ||| ||||||||| |||| |||||||||||| || ||||| |  ||||| ||||| ||||||||| |||| ||||    
T  45366625 agagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaagat 45366718  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 49044633 - 49044728
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagatac 96  Q
    |||||||||||| ||||| |||  |||||||| |||| ||||||| |||| |||||||||| ||| ||  |||| ||||| ||| |||| ||||||    
T  49044633 agagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcagatac 49044728  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 7765293 - 7765231
Alignment:
Q  3 agaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacag 65  Q
    |||||||||| ||||| |||||||||||||   ||  |||||||||||||| |||||||||||    
T  7765293 agaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacag 7765231  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33134230 - 33134326
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagaggtagataca 97  Q
    |||||||| || | |||| ||| ||| ||||| || | ||||||||||||||| || |||||||| ||  |||| ||||||||| |||| |||||||    
T  33134230 agagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagataca 33134326  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 45372463 - 45372519
Alignment:
Q  3 agaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 59  Q
    ||||||||| |||||| |||  || ||||| |||| |||||||||||||||||||||    
T  45372463 agaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacct 45372519  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 48862915 - 48862827
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggatctggattatcaattcaagagg 89  Q
    ||||||||||| |||||  ||| ||| ||||| || | ||||||||||||||| ||||| | ||||||  |||| ||||||||| ||||    
T  48862915 agagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgagg 48862827  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12194975 - 12194908
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 68  Q
    ||||| |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12194975 agagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12194908  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12439403 - 12439336
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 68  Q
    ||||| |||||||||||| ||||||| ||||| | || ||||||||||||||||||||||| ||||||    
T  12439403 agagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 12439336  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12199981 - 12199914
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 68  Q
    |||||||||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12199981 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12199914  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 12444409 - 12444342
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctcaacaggat 68  Q
    |||||||||||||||||| |||  || ||||| | || ||||||||||||||||||||||| ||||||    
T  12444409 agagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggat 12444342  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15348536 - 15348477
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctc 60  Q
    ||||||||||| |||||| ||| ||| ||||| |||| ||||||||||||||| ||||||    
T  15348536 agagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctc 15348477  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29687725 - 29687676
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcac 50  Q
    ||||||||||| |||||| |||  ||||||||||||| ||||||||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcac 29687676  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29712873 - 29712925
Alignment:
Q  1 agagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccgg 53  Q
    |||||||||||| ||||| ||| ||||||||| || | |||||||||||||||    
T  29712873 agagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccgg 29712925  T

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