View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3193_low_2 (Length: 845)
Name: NF3193_low_2
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3193_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 500 - 833
Target Start/End: Complemental strand, 41084774 - 41084441
Alignment:
| Q |
500 |
caaagttggtcgcgatatagaggatttgataggcatgagcgggtctctgatgttgtgagggagaagaagaggtcggcgtcacatctctatagacgatgac |
599 |
Q |
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| T |
41084774 |
caaagttggtcgcgatatagaggatttgataggcatgagcggatatctgatgttgtgagggagaagaagaggtcggcgtcacatctctatagacgatgac |
41084675 |
T |
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| Q |
600 |
gacatgatgtcgtcggcgtgacaaatgagtttgtcggcgtgagagtggaggttgtgttgcagacgaggtaaaattcaggttgattcaatacatatcgagc |
699 |
Q |
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| T |
41084674 |
gacatgatgtcgtcggcgtgacaaatgagtttgtcggcttgagagtggaggttgtgttgcagatgaggtaaaattcaggttgatccaatacatatcgagc |
41084575 |
T |
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| Q |
700 |
taagtcaaattaaataaaattcaactaagcttgattcatatttacatcttcacataaaaactttaaggcattatatacgagttttctcatttatatgatg |
799 |
Q |
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| T |
41084574 |
taagtcaaattaaataaaattcaactaagcttgattcatatttacatcttcacataaaaactttaaggcattatatacgagttttctcatttatacgatg |
41084475 |
T |
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| Q |
800 |
cttacatccacatttttaggaccgccccaatatt |
833 |
Q |
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| T |
41084474 |
cttacatccacatttttaggaccgccccaatatt |
41084441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 41085259 - 41084930
Alignment:
| Q |
17 |
taatggatatatatacatcgaataaagttttgtgcttcggctgcatctatcctttaatcttgggaagatttatactagttgtacaatttaaacaaattat |
116 |
Q |
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| T |
41085259 |
taatggatatatatacatcgaataaagttttgtgcttcggctgcatctatcctttaatcttgggaagatttatactagttgtacaatttaaacaaattat |
41085160 |
T |
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| Q |
117 |
tcttagtagtacaagtttatttccacggtgaaaatggttgggacgtacatagcgacaacctcaagcttctcacaaaattggtgttaagtacgttccccc- |
215 |
Q |
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| T |
41085159 |
tattagtagtacaagtttatttccacggtgaaaatggttgggacgtacatagcgacaacctcaagcttctcacaaaattggtgttaagtacgttccccca |
41085060 |
T |
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| Q |
216 |
-----tgtcatatttacacttcgtatcaaaagcaatcttggccattatgaattcatagacatccttttttcaaacacccaatatacaccccacgtgtcat |
310 |
Q |
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| T |
41085059 |
aaatttgtcatatttacacttcgtatcaaaagcaatcgtggccattatgaattcatagacatccttttttcaaacccccaatatacaccccacgtgtcat |
41084960 |
T |
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| Q |
311 |
tatggctattttggtgatttcaccttaccc |
340 |
Q |
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| T |
41084959 |
tagggctattttggtgatttcaccttaccc |
41084930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 41084889 - 41084835
Alignment:
| Q |
381 |
aacaccaccaccaccgtgtgtttaggttttcttatttccttgttgcagatttgcg |
435 |
Q |
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| T |
41084889 |
aacaccaccaccaccgtgtgtttaggttttcttatttcgttgttgcagatttgcg |
41084835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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