View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3193_low_4 (Length: 556)
Name: NF3193_low_4
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3193_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 27844067 - 27844590
Alignment:
| Q |
18 |
tctttgtcacattcttttctttgatttgaaaaactaactgctacatatttgatatttctagttctagcacttagaaaaacacaaacctaattacgtttta |
117 |
Q |
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| T |
27844067 |
tctttgtcacattcttttctttgatttgaaaaactaactgctacatatttgatatttctagttctagcacttagaaaaacacaaacctaattacgtgtta |
27844166 |
T |
|
| Q |
118 |
gcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgagcccgttttcggcccaacaaaatcgggcccatcccagaatccacaaaagcccga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844167 |
gcaaaagtcctcattcctcaacaacaaggaacattcaacctcacgagcccgttttcggcccaacaaaatcgggcccatcccagaatccacaaaagcccga |
27844266 |
T |
|
| Q |
218 |
ttctctacaacagctttcaaacccctttccaaagcttcaaccaccttctcctctcttaaatcatcaccaccttcaccattaggccactccaccaccacaa |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844267 |
ttctctataacagctttcaaacccctttccaaagcttcaaccaccttctcctctcttacatcatcaccaccttcaccattaggccactccaccaccacaa |
27844366 |
T |
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| Q |
318 |
cagtctttgtcctacctccaaccgtcatcatctccgctcgaaccggtttcgctaaaacagaccggattgcttgtgttaggtcatggttcagacccggacg |
417 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27844367 |
cagtctttgtcctacctccaaccgtcatcatctcagctcgaaccggtttcgctaaaacagaccggattgcttgtgttagatcatggttcagacccggacg |
27844466 |
T |
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| Q |
418 |
ctcctcacaacacactgtcactttcatcctccgtggttctccttcctctttgccgcaataactcactgtcgcctcatctgattctcctggaaacggccat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27844467 |
ctcctcacaacacactgtcactttcatcctccgtggttctccttcctctttgccgcaataactcactgtcgcctcatctgattctcctggaaacggccat |
27844566 |
T |
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| Q |
518 |
atctcaactacctctgtagaatta |
541 |
Q |
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| T |
27844567 |
gtctcaactacctctgtagaatta |
27844590 |
T |
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