View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3193_low_7 (Length: 406)

Name: NF3193_low_7
Description: NF3193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3193_low_7
NF3193_low_7
[»] chr3 (8 HSPs)
chr3 (15-391)||(1106939-1107326)
chr3 (15-391)||(1049817-1050208)
chr3 (17-391)||(1090541-1090931)
chr3 (14-391)||(1076732-1077125)
chr3 (14-391)||(1299895-1300288)
chr3 (237-388)||(13854743-13854894)
chr3 (97-138)||(5854815-5854856)
chr3 (100-141)||(13854598-13854639)
[»] scaffold0090 (2 HSPs)
scaffold0090 (237-388)||(8602-8753)
scaffold0090 (93-141)||(8860-8908)
[»] chr2 (2 HSPs)
chr2 (313-391)||(2662816-2662894)
chr2 (310-376)||(34328558-34328624)
[»] chr5 (4 HSPs)
chr5 (237-388)||(28419535-28419686)
chr5 (269-374)||(22689686-22689791)
chr5 (76-140)||(22689931-22689995)
chr5 (281-364)||(28432810-28432893)
[»] chr8 (5 HSPs)
chr8 (281-373)||(23555158-23555250)
chr8 (72-139)||(23360273-23360340)
chr8 (37-138)||(23554723-23554824)
chr8 (97-139)||(23561106-23561148)
chr8 (285-358)||(23392841-23392914)
[»] chr6 (2 HSPs)
chr6 (95-137)||(3979622-3979664)
chr6 (312-388)||(3979368-3979444)


Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 1106939 - 1107326
Alignment:
Q  15 agatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1106939 agatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggt 1107038  T
Q  115 ggttttggaccggtatataaggtaaacatgcaataacacttggttataatagatgagaaaacccttgaatctctttt-------------tctaactata 201  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||             ||||||||||    
T  1107039 ggttttggaccggtatataaggtaaacatgcaataac--ttggttataatagatgagaaaacccttgagtctctttttctaacaattttttctaactata 1107136  T
Q  202 aaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107137 aaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttat 1107236  T
Q  302 tttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107237 tttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 1107326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 1049817 - 1050208
Alignment:
Q  15 agatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggt 114  Q
    |||||||||| ||||||||||||||||||| ||||||||| | || ||||| ||   |||||| |||||||| || ||  ||||||| || |||||||||    
T  1049817 agatgaagaccaacaagattttgagcttcctttcttcaatatttcaacaatgataagtgccacaaatgacttttcgaactataacaaactcggagaaggt 1049916  T
Q  115 ggttttggaccggtatataaggtaaacatgcaat-aaca-cttggttataatagatgagaaaacccttgaatctctttttctaac-------------ta 199  Q
    || |||||||| ||||||||||||||||||||   |||| ||||  || || | |||||||| | ||||| |||| |||||||||             ||    
T  1049917 ggctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttgagtctcattttctaacaattttttccaacta 1050016  T
Q  200 taaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagtt 299  Q
    ||| |||||||||||||| | |  |||  | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1050017 taatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcgaaacaaggaacaagagaatttaaaaatgaagtt 1050116  T
Q  300 attttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    || |||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1050117 atattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 1090541 - 1090931
Alignment:
Q  17 atgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtgg 116  Q
    |||||||| ||||||||||||||||||| || |||||| | |||||||| ||   |||||| |||||||| || ||  ||||||| ||||||||||||||    
T  1090541 atgaagaccaacaagattttgagcttcctttgttcaatatttctacaatgataagtgccacaaatgacttttcgaactataacaaacttggagaaggtgg 1090640  T
Q  117 ttttggaccggtatataaggtaaacatgca-ataac-acttggttataatagatgagaaaaccctt-gaatctctttttctaa-------------ctat 200  Q
     |||||||| ||||||||||||||||||||   ||| |||||  || || | |||||||| | ||| || |||| ||| ||||             ||||    
T  1090641 ctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactat 1090740  T
Q  201 aaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagtta 300  Q
    || |||||||||||||| | |  |||  | | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  1090741 aatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagtta 1090840  T
Q  301 ttttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    | |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1090841 tattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1090931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 391
Target Start/End: Original strand, 1076732 - 1077125
Alignment:
Q  14 gagatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaagg 113  Q
    ||||||||||| ||||||||||||||||||| ||||||||| | |||||||| ||   |||||| ||| |||| ||  |  |||| || |||||||||||    
T  1076732 gagatgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaagg 1076831  T
Q  114 tggttttggaccggtatataaggtaaacatgca-ataac-acttggttataatagatgagaaaaccctt-gaatctctttttctaa-------------c 197  Q
    ||| |||||||| ||||||||||||||||||||   ||| |||||  || || | |||||||| | ||| || |||| ||| ||||             |    
T  1076832 tggctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaac 1076931  T
Q  198 tataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaag 297  Q
    ||||| |||||||||||||| | | | ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  1076932 tataatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaag 1077031  T
Q  298 ttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    |||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1077032 ttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1077125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 1300288 - 1299895
Alignment:
Q  14 gagatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaagg 113  Q
    ||||||||||| ||||||||||||||||||| ||||||||| | |||||||| ||   |||||| ||| |||| ||  |  |||| || |||||||||||    
T  1300288 gagatgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaagg 1300189  T
Q  114 tggttttggaccggtatataaggtaaacatgca-ataac-acttggttataatagatgagaaaaccctt-gaatctctttttctaa-------------c 197  Q
    ||| |||||||| ||||||||||||||||||||   ||| |||||  || || | |||||||| | ||| || |||| ||| ||||             |    
T  1300188 tggctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaac 1300089  T
Q  198 tataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaag 297  Q
    ||||| |||||||||||||| | | | ||  | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  1300088 tataatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaag 1299989  T
Q  298 ttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    |||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  1299988 ttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagagaatgcttatctatgaatatat 1299895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 13854743 - 13854894
Alignment:
Q  237 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 336  Q
    ||||| ||||||||||||||| | |||||   ||||||| | | ||| ||| ||||||||||||| |||||| | ||||||||||||||||||||||| |    
T  13854743 attgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgtactaaacttcaacaccgaaatcttgtaa 13854842  T
Q  337 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 388  Q
    ||||| |||||||||||||| ||||||||||||||||| | || ||||||||    
T  13854843 aggttgttggttgttgtattgaaggagaagagaaaatgttgatatatgaata 13854894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 5854815 - 5854856
Alignment:
Q  97 aacaagcttggagaaggtggttttggaccggtatataaggta 138  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  5854815 aacaagctgggagaaggtggttttggaccggtatacaaggta 5854856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 13854598 - 13854639
Alignment:
Q  100 aagcttggagaaggtggttttggaccggtatataaggtaaac 141  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  13854598 aagctcggggaaggtggttttggaccagtatataaggtaaac 13854639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 237 - 388
Target Start/End: Complemental strand, 8753 - 8602
Alignment:
Q  237 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 336  Q
    ||||| ||||||||||||||| | |||||   |||||||   | ||| ||||| ||||||||||| |||||| | ||||||||||||||||||||||| |    
T  8753 attgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgtactaaacttcaacaccgaaatcttgtta 8654  T
Q  337 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 388  Q
    ||||| |||||||||||||| ||||||| ||||||||| | || ||||||||    
T  8653 aggttgttggttgttgtattgaaggagatgagaaaatgttgatttatgaata 8602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 8908 - 8860
Alignment:
Q  93 tgataacaagcttggagaaggtggttttggaccggtatataaggtaaac 141  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||    
T  8908 tgataacaagctcggtgaaggtggttttggaccggtatacaaggtaaac 8860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 2662894 - 2662816
Alignment:
Q  313 aacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaatatat 391  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||| |  |||||||||||||    
T  2662894 aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaagataaaatgttggtctatgaatatat 2662816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Original strand, 34328558 - 34328624
Alignment:
Q  310 cgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgct 376  Q
    ||||||||||||||||||||||||| ||| |||||||||||||  || ||||||| |||||||||||    
T  34328558 cgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggagaaaatgct 34328624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 388
Target Start/End: Original strand, 28419535 - 28419686
Alignment:
Q  237 attgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtca 336  Q
    ||||| |||||||| |||||||||| |||  | |||||| | | |||||||||||||||||| || || ||    ||| | ||||| ||||||||||| |    
T  28419535 attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatattgtgcgttaaattgcaacatcgaaatcttgtta 28419634  T
Q  337 aggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 388  Q
    |||||||||||||||| ||| ||||||| || ||| || | |||||||||||    
T  28419635 aggttcttggttgttgcattgaaggagatgaaaaactgttaatctatgaata 28419686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 22689791 - 22689686
Alignment:
Q  269 acaaggaacaagagaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagag 368  Q
    ||||||| ||| |||||||||||||||||| || || ||  | ||| | ||||| ||||||||||| |||||| |||||||||| ||| ||||||| |||    
T  22689791 acaaggatcaatagaatttaaaaatgaagtcatattgtgcgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggagacgag 22689692  T
Q  369 aaaatg 374  Q
    ||||||    
T  22689691 aaaatg 22689686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 22689995 - 22689931
Alignment:
Q  76 accaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataaggtaaa 140  Q
    |||||| ||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||||||    
T  22689995 accaataacttctcaaatgataataaacttggtgaaggtggttttggaccggtatacaaggtaaa 22689931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 364
Target Start/End: Original strand, 28432810 - 28432893
Alignment:
Q  281 agaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggaga 364  Q
    |||||||||||||||||| || || ||| | ||| | ||||| ||||||||||| |||||| |||||||||| ||| |||||||    
T  28432810 agaatttaaaaatgaagtcatattgtgtgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggaga 28432893  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 373
Target Start/End: Original strand, 23555158 - 23555250
Alignment:
Q  281 agaatttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaat 373  Q
    ||||||||| | |||||| || |||||| | ||||||||||||||||||||||| |||||  |||||||||| ||| ||  ||| ||||||||    
T  23555158 agaatttaagagtgaagtaatattatgtgctaaacttcaacaccgaaatcttgttaaggtgattggttgttgcattgaaaaagatgagaaaat 23555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 23360273 - 23360340
Alignment:
Q  72 tgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataaggtaa 139  Q
    |||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| || || ||||||||||    
T  23360273 tgccactaatgacttctcaaatgacaacaaacttggtgaaggtggttttggtcctgtttataaggtaa 23360340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 23554723 - 23554824
Alignment:
Q  37 gagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataacaagcttggagaaggtggttttggaccggtatataagg 136  Q
    |||||||| |||||  |||| || |||||| ||||||| || ||| | ||||| |  || ||||| ||||| ||||||||||||||||||||||| ||||    
T  23554723 gagcttcctttctttgatctttcaacaatacttgatgcaactaataagttctcaacggacaacaaacttggtgaaggtggttttggaccggtatacaagg 23554822  T
Q  137 ta 138  Q
    ||    
T  23554823 ta 23554824  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 139
Target Start/End: Complemental strand, 23561148 - 23561106
Alignment:
Q  97 aacaagcttggagaaggtggttttggaccggtatataaggtaa 139  Q
    |||||| |||||||||||||||||||||| ||||| |||||||    
T  23561148 aacaagattggagaaggtggttttggacctgtatacaaggtaa 23561106  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 358
Target Start/End: Original strand, 23392841 - 23392914
Alignment:
Q  285 tttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattca 358  Q
    ||||||||||||||| | ||   | |||||||||||||||| |||||||| ||| |||||||||| || |||||    
T  23392841 tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca 23392914  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 3979664 - 3979622
Alignment:
Q  95 ataacaagcttggagaaggtggttttggaccggtatataaggt 137  Q
    ||||||| ||||||||||||||||||||||||||||| |||||    
T  3979664 ataacaaacttggagaaggtggttttggaccggtatacaaggt 3979622  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 3979444 - 3979368
Alignment:
Q  312 aaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagagaaaatgcttatctatgaata 388  Q
    |||||||||||||| |||||||||||  ||||||| || || ||| |||||| ||| | |||||| |||||||||||    
T  3979444 aaacttcaacaccgtaatcttgtcaaacttcttggatgctgcattgaaggaggagaaacaatgctgatctatgaata 3979368  T

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