View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3194_high_2 (Length: 600)
Name: NF3194_high_2
Description: NF3194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3194_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 33855479 - 33854898
Alignment:
| Q |
1 |
ttttcattctagctagaattacggtactagtatcttttttctctggttgtataacatgtatacgctcttggagtaaaatttgttgagaaatgaaaatcaa |
100 |
Q |
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| T |
33855479 |
ttttcatgctagctagaattacggtactagtatcttttttctctggttgtataacatgtatacgctcttggagtaaaatttgttgagaaatgaaaatcaa |
33855380 |
T |
|
| Q |
101 |
ataaataggttaaatcaatcaaactggaagaaaatattaaaattttgtttataccttattgccaagcaaaaagggggaagcagtaatggaggcagaactg |
200 |
Q |
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| T |
33855379 |
ataaataggttaaatcaatcaaactggaagaaaatattaaaattttgtttataccttattgccaagcaaaaagggggaagcagtaatggaggcagaactg |
33855280 |
T |
|
| Q |
201 |
tggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcatcaagtttgtgaagaagc |
300 |
Q |
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| T |
33855279 |
tggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaacagatcctcaagtttgtgaagaagc |
33855180 |
T |
|
| Q |
301 |
ataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctagatgaaattactaccctcctc |
400 |
Q |
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| T |
33855179 |
ataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagctaaatgaaattattaccctcctc |
33855080 |
T |
|
| Q |
401 |
tctgagaggttcttgattttcacaactacgggagggaagtgtatatatagaagaatgtggtaacaataggattgatgtcactataagaaaatacgaacga |
500 |
Q |
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| T |
33855079 |
tctgagaggttcttgattttcataactacgggagggaattgtatatatagaagaatgtggtaacaataggattgatgtcactataagaaaatacgaacga |
33854980 |
T |
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| Q |
501 |
agtcaattaattatggtccctactcgctctgttatatttttacaagagaccctactcactcttaaaaattaactattggtac |
582 |
Q |
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| T |
33854979 |
agtcaattaattatggtccctactcgctctgttatatttttacaagagcccctactcactcttaaaaattaactattggtac |
33854898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 78 - 452
Target Start/End: Complemental strand, 33865761 - 33865387
Alignment:
| Q |
78 |
atttgttgagaaatgaaaatcaaataaataggttaaatcaatcaaactggaagaaaatattaaaattttgtttataccttattgccaagcaaaaaggggg |
177 |
Q |
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| T |
33865761 |
atttgttgagaaatgaaaatcaaataaataggttaaatcaatcaaactggaagaaaatattaaaattttgtttataccttattgccaagcaaaaaggggg |
33865662 |
T |
|
| Q |
178 |
aagcagtaatggaggcagaactgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaaca |
277 |
Q |
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| T |
33865661 |
aagcagtaatggaggcagaactgtggagagcaagaatggttttgtgaatggcaatctttgaaagtggctgctctccaattccattcatatcacccaaaca |
33865562 |
T |
|
| Q |
278 |
gatcatcaagtttgtgaagaagcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagc |
377 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865561 |
gatcctcaagtttgtgaagaagcataatattacaaatatcatgtttatcttggaaaaactagaacctttcattttttcaaatgaaaaattatttgctagc |
33865462 |
T |
|
| Q |
378 |
tagatgaaattactaccctcctctctgagaggttcttgattttcacaactacgggagggaagtgtatatatagaa |
452 |
Q |
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| T |
33865461 |
tagatgaaattattaccctcctctctgagaggttcttgattttcataactacaggagggaattgtatatatagaa |
33865387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 33865899 - 33865832
Alignment:
| Q |
16 |
gaattacggtactagtatcttttttctctggttgtataacatg----tatacgctcttggagtaaaat |
79 |
Q |
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| T |
33865899 |
gaattacggtactggtatcttctttctctggttgtataacattaatttatacgctcttggagtaaaat |
33865832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 550 - 578
Target Start/End: Complemental strand, 33854252 - 33854224
Alignment:
| Q |
550 |
ccctactcactcttaaaaattaactattg |
578 |
Q |
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| T |
33854252 |
ccctactcactcttaaaaattaactattg |
33854224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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