View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3194_low_1 (Length: 653)

Name: NF3194_low_1
Description: NF3194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3194_low_1
NF3194_low_1
[»] chr4 (5 HSPs)
chr4 (203-651)||(55726527-55726975)
chr4 (7-102)||(55726330-55726425)
chr4 (549-652)||(55590028-55590131)
chr4 (541-630)||(41326982-41327073)
chr4 (541-630)||(33633510-33633601)
[»] chr7 (2 HSPs)
chr7 (541-649)||(34996242-34996352)
chr7 (12-100)||(34996660-34996749)
[»] chr8 (1 HSPs)
chr8 (541-653)||(33099169-33099283)
[»] chr2 (2 HSPs)
chr2 (541-630)||(9224705-9224796)
chr2 (541-630)||(9272574-9272665)
[»] chr3 (1 HSPs)
chr3 (541-630)||(43659469-43659560)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 203 - 651
Target Start/End: Original strand, 55726527 - 55726975
Alignment:
Q  203 gttataaataaattgatgaattcaatttttagaaatcaattaaattccttttaattgaagctgagttgtttctttgctgcgactgcgatctctcattggt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||  ||||    
T  55726527 gttataaataaattgatgaattcaatttttagaaatcaattaaattccttttaattgaagctgagttgtttctttgctgcga------tctctcgctggt 55726620  T
Q  303 ggatgagaataatttttgaagctttnnnnnnnttcttgtgaagcttaattgaggctttnnnnnnnnnntcctcaataaattgaaacttgnnnnnnnttcc 402  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||          |||||||||||||||||||||       ||||    
T  55726621 ggatgagaataatttttgaagctttaaaaaaattcttgtgaagcttaattgaggctttaaaaaaaa--tcctcaataaattgaaacttgaaaaaaattcc 55726718  T
Q  403 ttttagaataacatcaatgttgcctcaattaaattccttttcatgttcacaatcacaattcacaa---cagttggttcctccttcaacnnnnnnnnnn-- 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||                
T  55726719 ttttagaataacatcaatgttgcctcaattaaattccttttcatgttcacaatcacaattcacaagtacagttggttcctccttcaacaaaaaaaaaaaa 55726818  T
Q  498 ---gtacagttggtgtgcaattcatccatgtgaatgcaattatcaattgaaggaaagggcaaaattggaacaataaagactataaacttctctctcattt 594  Q
       ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55726819 aaagtatagttggtgtgcaattcatccacgtgaatgcaattatcaattgaaggaaagggcaaaattggaacaataaagactataaacttctctctcattt 55726918  T
Q  595 cttctctattttggggagaagataaaaagtggtgggatccattgttttttaatctct 651  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  55726919 cttctctattttggggagaagataaaaagtgatgggatccattgttttttaatctct 55726975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 55726330 - 55726425
Alignment:
Q  7 ggagcagagagaagtgcttactattattgaaaggactaaaccacccctacaaaaatctctcatcaaatttattttgtttcataattcaattaataa 102  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55726330 ggagcggagagaagtgcttactatcattgaaaggactaaaccacccctacaaaaatctctcatcaaatttattttgtttcataattcaattaataa 55726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 652
Target Start/End: Original strand, 55590028 - 55590131
Alignment:
Q  549 aagggcaaaattggaacaataaagactataaacttctctctc--atttcttctctattttggggagaagataaaaagtggtgggatccattgttttttaa 646  Q
    ||||||||| |||| | || |||||||| |||||||||||||  |||||||| ||| |||||||||||||| ||||||||||||  | |  |||||||||    
T  55590028 aagggcaaacttgggataacaaagacta-aaacttctctctcctatttcttcactactttggggagaagat-aaaagtggtgggtcctacagttttttaa 55590125  T
Q  647 tctctc 652  Q
    ||||||    
T  55590126 tctctc 55590131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 630
Target Start/End: Original strand, 41326982 - 41327073
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaacttctctctca--tttcttctctattttggggagaagataaaaagtggtggg 630  Q
    ||||||| ||||||||| | |||| || |||||||| |||||| ||||||   ||||||| ||| ||||| |||||||| ||||||||||||    
T  41326982 ttgaagggaagggcaaagtaggaataacaaagactagaaacttttctctcccctttcttccctactttggagagaagatcaaaagtggtggg 41327073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 630
Target Start/End: Original strand, 33633510 - 33633601
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaac--ttctctctcatttcttctctattttggggagaagataaaaagtggtggg 630  Q
    ||||||| ||||||||| | |||| || |||||||| ||||  ||||||| | ||||||| ||| ||||  ||||||||||||| |||||||    
T  33633510 ttgaaggcaagggcaaagtaggaataacaaagactagaaacctttctctcccctttcttccctactttgaagagaagataaaaaatggtggg 33633601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 541 - 649
Target Start/End: Complemental strand, 34996352 - 34996242
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaacttctctctc--atttcttctctattttggggagaagataaaaagtggtgggatcc-att 637  Q
    ||||||| |||||||||| |||||||| |||| ||| |||||||||||||  |||||||| ||| ||||| |||||||||||||||||| |||||| | |    
T  34996352 ttgaaggcaagggcaaaactggaacaacaaaggctagaaacttctctctcctatttcttccctactttggagagaagataaaaagtggt-ggatcctact 34996254  T
Q  638 gttttttaatct 649  Q
    ||||||||||||    
T  34996253 gttttttaatct 34996242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 34996749 - 34996660
Alignment:
Q  12 agagagaagtgcttactattattgaaaggactaaaccacccctacaaaaatctc-tcatcaaatttattttgtttcataattcaattaat 100  Q
    ||||||||||| ||| ||||||| ||||||||||| |||||||||||||||||| |||   |||||| ||| ||||||||||||||||||    
T  34996749 agagagaagtgtttaatattattaaaaggactaaaacacccctacaaaaatctcatcaaataatttaatttatttcataattcaattaat 34996660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 653
Target Start/End: Complemental strand, 33099283 - 33099169
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaacttctctctca--tttcttctctattttggggagaagataaaaagtggtgggatccattg 638  Q
    ||||||| ||||||||| | |||| || ||||||||||||||| ||||||   ||||||| ||| ||||| |||||||||||||||||||||  | || |    
T  33099283 ttgaaggtaagggcaaagtaggaataacaaagactataaacttttctctcccctttcttccctactttggagagaagataaaaagtggtgggccctatag 33099184  T
Q  639 ttttttaatctctct 653  Q
    ||||| |||||||||    
T  33099183 tttttaaatctctct 33099169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 630
Target Start/End: Complemental strand, 9224796 - 9224705
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaac--ttctctctcatttcttctctattttggggagaagataaaaagtggtggg 630  Q
    ||||||| ||||||||| | |||| || |||||||| ||||  ||||||| | ||||||| ||| ||||| |||||||||||||||||||||    
T  9224796 ttgaaggcaagggcaaagtaggaataacaaagactagaaacctttctctcccctttcttccctactttggagagaagataaaaagtggtggg 9224705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 630
Target Start/End: Complemental strand, 9272665 - 9272574
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaac--ttctctctcatttcttctctattttggggagaagataaaaagtggtggg 630  Q
    ||||||| ||||||||| | |||| || |||||||| ||||  ||||||| | ||||||| ||| ||||| ||||| |||||||||||||||    
T  9272665 ttgaaggcaagggcaaagtaggaataacaaagactagaaacctttctctcccctttcttccctactttggagagaaaataaaaagtggtggg 9272574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 630
Target Start/End: Original strand, 43659469 - 43659560
Alignment:
Q  541 ttgaaggaaagggcaaaattggaacaataaagactataaacttctctctca--tttcttctctattttggggagaagataaaaagtggtggg 630  Q
    ||||||| ||||||||| | |||| || |||||||| |||||| ||||||   ||| ||| ||| ||||| |||||||| ||||||||||||    
T  43659469 ttgaagggaagggcaaagtaggaataacaaagactagaaacttttctctccccttttttccctactttggagagaagatcaaaagtggtggg 43659560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University