View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3194_low_3 (Length: 259)
Name: NF3194_low_3
Description: NF3194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3194_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 31 - 241
Target Start/End: Original strand, 28101457 - 28101667
Alignment:
| Q |
31 |
atcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacatatatgtaggccagctatgaccaatcta-actaaactaaatc |
129 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| | |
|
|
| T |
28101457 |
atcaaagcaagaaaaattaaaatgcaaagcaggaggaggcctgaaccttattacaacatatatgtaggccaactatgaccaatctatactaaaaaaaaac |
28101556 |
T |
|
| Q |
130 |
tatgctaacaataagagcacaactcaaaggaaaagctcctaaaaactcaaacatttatgagggctaactaagccatccatttgtgttaaatgactctgcc |
229 |
Q |
| |
|
|||||||| || |||||||||||||| | | |||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||||| |||| |
|
|
| T |
28101557 |
tatgctaataaaaagagcacaactcagatg-aaagctcctaaaaactcaaacatttatgtgggctaaccaagcactccatatgtgttaaatgactatgcc |
28101655 |
T |
|
| Q |
230 |
tagaaacataaa |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28101656 |
tagaaacataaa |
28101667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 36906555 - 36906338
Alignment:
| Q |
23 |
ttttgttgatcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacatatatgtaggccagctatgaccaatcta-actaa |
121 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
36906555 |
tttttttgatcaaagcaagaaaaattaaaatgcaaatcatgaggagg-atgaaccttattacaacatatatgtaggccaactatgaccaatctatactaa |
36906457 |
T |
|
| Q |
122 |
actaaatctatgctaacaataagagcacaactcaaaggaaaagctcctaaaaactcaaacatttatgagggctaactaagccatccatttgtgttaaatg |
221 |
Q |
| |
|
| ||| |||||||| || |||||||||||||| | |||| ||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
36906456 |
aacaaaaatatgctaataaaaagagcacaactcagaagaaa-gctcctaaagactcaaacatttatgtgggctaaccaagccctccatttgtgttaaatg |
36906358 |
T |
|
| Q |
222 |
actctgcctagaaacataaa |
241 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36906357 |
actctgcctagaaacataaa |
36906338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 3248211 - 3248419
Alignment:
| Q |
29 |
tgatcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacatatatgtaggccagctatgaccaatct--aactaaactaa |
126 |
Q |
| |
|
||||||||| |||||||||||||||| |||| |||||||||| || ||||||||||| |||| |||||| ||||||||||||| | | |||| || |
|
|
| T |
3248211 |
tgatcaaagcaagaaaaattaaaatgcaaagtaggaggaggcctgaaccttattaca-----tatgcaggccaactatgaccaatctttaccgaaac-aa |
3248304 |
T |
|
| Q |
127 |
atctatgctaacaataagagcacaactcaaaggaaaagctcctaaaaactcaaacatttatgagggctaactaagccatccatttgtgttaaatgactct |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||| ||||||||||||||| ||||||||||| |||||| ||| | || |||| |||||||||||||| |
|
|
| T |
3248305 |
atctatgctaataataagagcacaactcagatgaaa-gctcctaaaaactcagacatttatgagtgctaaccaagtcctctatttatgttaaatgactct |
3248403 |
T |
|
| Q |
227 |
gc-ctagaaacataaa |
241 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
3248404 |
gctctagaaacataaa |
3248419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 35553943 - 35554152
Alignment:
| Q |
31 |
atcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacatatatgtaggccagctatgaccaatcta-actaaactaaatc |
129 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
35553943 |
atcaaagcaagaaaaattaaaatgcaaatcaggaggaggcctgaaccttattacaacatatatgtaggccaactatgaccaatctatactaaaacaaaat |
35554042 |
T |
|
| Q |
130 |
tatgctaacaataagagcacaactcaaaggaaaagctcctaaaaactcaaacatttatgagggctaactaagccatccatttgtgttaaatgactctgcc |
229 |
Q |
| |
|
|||||||| || |||||||||||||| | | |||||| ||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
35554043 |
tatgctaataaaaagagcacaactcagatg-aaagcttctaaagactcaaacatttatgtgggctaaccaagccctccatttgtgttaaatgactctgcc |
35554141 |
T |
|
| Q |
230 |
tagaaacataa |
240 |
Q |
| |
|
||||||||||| |
|
|
| T |
35554142 |
tagaaacataa |
35554152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 6048322 - 6048389
Alignment:
| Q |
22 |
tttttgttgatcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacata |
90 |
Q |
| |
|
||||| || ||||||| |||||||||||||||| ||| ||||||||||| ||||||||| |||| |||| |
|
|
| T |
6048322 |
ttttttttcatcaaagcaagaaaaattaaaatgcaaa-caggaggaggcctggaccttaatacatcata |
6048389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 12066994 - 12067075
Alignment:
| Q |
31 |
atcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttattacaacatatatgtaggccagctatgaccaa |
112 |
Q |
| |
|
||||||| |||||||||||| | ||||||| || ||||||| |||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
12066994 |
atcaaagctagaaaaattaaattacaaagcagaagtaggcatgaaccttattacaacatataagcaggccaactatgaccaa |
12067075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 2091644 - 2091705
Alignment:
| Q |
22 |
tttttgttgatcaaagtaagaaaaattaaaatgtaaagcaggaggaggcatggaccttatta |
83 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||| |||||||||| || ||||||||| |
|
|
| T |
2091644 |
ttttttttgatcaaagtaagaaaaattaaattgcaaaataggaggaggcctgaaccttatta |
2091705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University