View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3194_low_4 (Length: 210)

Name: NF3194_low_4
Description: NF3194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3194_low_4
NF3194_low_4
[»] chr6 (8 HSPs)
chr6 (12-181)||(4420084-4420253)
chr6 (78-153)||(33419186-33419261)
chr6 (78-140)||(33405338-33405400)
chr6 (76-149)||(12235489-12235561)
chr6 (117-153)||(19602191-19602227)
chr6 (115-153)||(6389756-6389794)
chr6 (115-153)||(34446578-34446616)
chr6 (109-153)||(13364707-13364751)
[»] chr7 (7 HSPs)
chr7 (47-153)||(41229236-41229344)
chr7 (85-159)||(7133251-7133330)
chr7 (77-153)||(12278848-12278923)
chr7 (85-153)||(23751913-23751980)
chr7 (113-153)||(23930232-23930272)
chr7 (115-153)||(29812672-29812710)
chr7 (48-153)||(21880165-21880271)
[»] chr8 (5 HSPs)
chr8 (85-153)||(39820442-39820509)
chr8 (107-153)||(12559106-12559152)
chr8 (107-152)||(27733861-27733906)
chr8 (84-120)||(14659673-14659709)
chr8 (77-153)||(20679366-20679441)
[»] chr5 (6 HSPs)
chr5 (77-152)||(26205725-26205805)
chr5 (48-153)||(42893373-42893479)
chr5 (85-153)||(43554534-43554607)
chr5 (77-153)||(7997137-7997212)
chr5 (115-153)||(39696007-39696045)
chr5 (125-153)||(25863217-25863245)
[»] chr4 (8 HSPs)
chr4 (48-153)||(3144587-3144698)
chr4 (86-153)||(49659502-49659569)
chr4 (46-153)||(18513173-18513287)
chr4 (84-153)||(33950149-33950218)
chr4 (113-153)||(20743284-20743324)
chr4 (77-119)||(10133755-10133797)
chr4 (115-153)||(31243556-31243594)
chr4 (102-146)||(15835633-15835677)
[»] chr3 (10 HSPs)
chr3 (77-145)||(12100290-12100357)
chr3 (102-153)||(20691332-20691383)
chr3 (84-153)||(21149080-21149149)
chr3 (85-153)||(25074802-25074875)
chr3 (77-153)||(24205012-24205087)
chr3 (115-153)||(25892473-25892511)
chr3 (103-153)||(40150567-40150617)
chr3 (77-153)||(12704622-12704703)
chr3 (85-153)||(15864846-15864913)
chr3 (113-153)||(25652037-25652077)
[»] chr2 (6 HSPs)
chr2 (115-153)||(25544494-25544532)
chr2 (102-153)||(2415330-2415381)
chr2 (115-153)||(23354660-23354698)
chr2 (46-153)||(34006928-34007037)
chr2 (113-153)||(12748697-12748737)
chr2 (113-153)||(30563422-30563462)
[»] chr1 (4 HSPs)
chr1 (78-150)||(11412739-11412811)
chr1 (110-153)||(42325573-42325616)
chr1 (113-159)||(6573996-6574042)
chr1 (85-153)||(42004920-42004993)
[»] scaffold0049 (1 HSPs)
scaffold0049 (115-153)||(56935-56973)
[»] scaffold0022 (1 HSPs)
scaffold0022 (83-153)||(90856-90925)
[»] scaffold0598 (1 HSPs)
scaffold0598 (117-153)||(8063-8099)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 4420084 - 4420253
Alignment:
Q  12 agcagcagagaatattttaagactttgtagttagacctatgaagcatggacacttctaatattaggtgtcctggtgtcggacacgcgttggtgtctgaca 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||    
T  4420084 agcaacagagaatattttaagactttgtagttagacctatgaagcatggacactcctaatattaggtgtcctggtgtcagacacacgttggtgtctgaca 4420183  T
Q  112 ccaacacctatggttacactgaattatatcattttctcaaatgatcattgtcgtcggcgtgtatggtgtc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4420184 ccaacacctatggttacactgaattatatcattttctcaaatgatcatcgtcgtcggcgtgtatggtgtc 4420253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 33419261 - 33419186
Alignment:
Q  78 tgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||  ||||| |||||||||||| ||| ||||||    
T  33419261 tgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattatatcaatttttcaaat 33419186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 33405400 - 33405338
Alignment:
Q  78 tgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatat 140  Q
    ||||||||||| |||||||||| |||||||| ||||||||| |||| ||||| ||| ||||||    
T  33405400 tgtcctggtgttggacacgcgtcggtgtctggcaccaacacatatgattacattgagttatat 33405338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 12235489 - 12235561
Alignment:
Q  76 ggtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctc 149  Q
    ||||||| |||| ||||||| ||| |||||| ||||| | |||||||| |||||||||||||| ||||||||||    
T  12235489 ggtgtcccggtgccggacacacgtcggtgtcggacacga-cacctatgattacactgaattatgtcattttctc 12235561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 19602191 - 19602227
Alignment:
Q  117 acctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||| |||||||||||||||||||||||||||||    
T  19602191 acctatgattacactgaattatatcattttctcaaat 19602227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 6389794 - 6389756
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  6389794 acacctatgattacactaaattatatcattttctcaaat 6389756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 34446616 - 34446578
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  34446616 acacctatgattacactgaattatgtcattttctcaaat 34446578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 13364707 - 13364751
Alignment:
Q  109 acaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||| |||| |||| |||||||||||||||| ||||||||||||    
T  13364707 acaccgacacatatgattacactgaattatatgattttctcaaat 13364751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 41229236 - 41229344
Alignment:
Q  47 cctatgaagcatggacacttctaatattagg--tgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcatt 144  Q
    ||||||||||| |||||||||| ||||||||  ||||   ||| |||||||||||||||||| |||||| || |||||| ||| || ||||||| |||||    
T  41229236 cctatgaagcacggacacttctcatattaggcgtgtcgcagtgacggacacgcgttggtgtccgacaccgacgcctatgattatacagaattatgtcatt 41229335  T
Q  145 ttctcaaat 153  Q
    |||||||||    
T  41229336 ttctcaaat 41229344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 7133251 - 7133330
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacac-----caacacctatggttacactgaattatatcattttctcaaatgatcat 159  Q
    ||||||||||||||| |||||| |||||     || |||||||| |||||||||||||| |||||||||||||| |||||    
T  7133251 gtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaattatcat 7133330  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 12278923 - 12278848
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||| |||||| |||||||||||||||| |||| | |||| |||  |||||||||||||| ||||||||| ||||    
T  12278923 gtgtcccggtgtcagacacgcgttggtgtccgaca-cgacacatataattacactgaattatgtcattttcttaaat 12278848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 23751980 - 23751913
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||| ||||||||| |||||| ||||| | |||||||| ||||||| |||||||||||||| ||||||    
T  23751980 gtgtctgacacgcgtcggtgtccgacacga-cacctatgattacactaaattatatcattttatcaaat 23751913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 23930272 - 23930232
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  23930272 caacacctatgattacactgaattatgtcattttctcaaat 23930232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 29812672 - 29812710
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  29812672 acacctatgattacactaaattatatcattttctcaaat 29812710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 21880271 - 21880165
Alignment:
Q  48 ctatgaagcatggacacttctaatattagg--tgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattt 145  Q
    |||||||||| ||||||||||   ||||||  ||||||||||||||||| | || | |||| |||||| |||| | |  |||||||||||||| | ||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaattt 21880173  T
Q  146 tctcaaat 153  Q
    ||||||||    
T  21880172 tctcaaat 21880165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 39820509 - 39820442
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||||||| |||||| ||||| | |||||||| ||||||| |||||||||||||||||||||    
T  39820509 gtgtcggacacgcgtcggtgtccgacacga-cacctatgattacactaaattatatcattttctcaaat 39820442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 12559106 - 12559152
Alignment:
Q  107 tgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| || |||| |||||||||||||||||||||||||||||    
T  12559106 tgacaccaatacatatgattacactgaattatatcattttctcaaat 12559152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 27733906 - 27733861
Alignment:
Q  107 tgacaccaacacctatggttacactgaattatatcattttctcaaa 152  Q
    |||||||||||| | || ||||| ||||||||||||||||||||||    
T  27733906 tgacaccaacacttgtgattacattgaattatatcattttctcaaa 27733861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 14659673 - 14659709
Alignment:
Q  84 ggtgtcggacacgcgttggtgtctgacaccaacacct 120  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  14659673 ggtgttggacacgcgttggtgtctgacaccgacacct 14659709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 20679366 - 20679441
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||| ||||||||||||| ||||  |||||||||| |||| |||  |||||||||| ||| | ||||||||||||    
T  20679366 gtgtcccggtgtcggacacgtgttgc-gtctgacaccgacacttataattacactgaactatgtgattttctcaaat 20679441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 26205725 - 26205805
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacacca-----acacctatggttacactgaattatatcattttctcaaa 152  Q
    |||||| ||||||||| ||||||||||||| |||||||     ||||||||| |||||||||||||| |||||||||||||    
T  26205725 gtgtcccggtgtcggatacgcgttggtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 42893479 - 42893373
Alignment:
Q  48 ctatgaagcatggacacttctaatattag--gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattt 145  Q
    |||||||||||||||||| || |||||||  |||||||||||||||||||| ||| |||||||||||| |||| | |  |||||||| ||||| | ||||    
T  42893479 ctatgaagcatggacactcctcatattaggcgtgtcctggtgtcggacacgtgtt-gtgtctgacaccgacacttgtaattacactggattatgtgattt 42893381  T
Q  146 tctcaaat 153  Q
    | ||||||    
T  42893380 tttcaaat 42893373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 43554607 - 43554534
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacac-----caacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||||||| |||||| |||||     | ||||||||| ||||||| |||||||||||||||||||||    
T  43554607 gtgtcggacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaat 43554534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 7997137 - 7997212
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||| ||||||||||||||  ||||| ||||| | ||| |||  |||||||| ||||||||||||||||||||    
T  7997137 gtgtcctgatgtcggacacgcgtcagtgtccgacacga-cacttataattacactgtattatatcattttctcaaat 7997212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 39696007 - 39696045
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  39696007 acacctatgattacactaaattatatcattttctcaaat 39696045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 153
Target Start/End: Complemental strand, 25863245 - 25863217
Alignment:
Q  125 ttacactgaattatatcattttctcaaat 153  Q
    |||||||||||||||||||||||||||||    
T  25863245 ttacactgaattatatcattttctcaaat 25863217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 3144587 - 3144698
Alignment:
Q  48 ctatgaagcatggacacttctaatattaggtgtc-ctggtgtcggacacgcgttggtgtctgacac-----caacacctatggttacactgaattatatc 141  Q
    |||||||||| ||||||||||   |||||||||  || |||| |||||||||||||||||||||||     | ||||||||| ||||||| |||||||||    
T  3144587 ctatgaagcacggacacttctcggattaggtgtgtctcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatc 3144686  T
Q  142 attttctcaaat 153  Q
    ||||||| ||||    
T  3144687 attttctgaaat 3144698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 49659502 - 49659569
Alignment:
Q  86 tgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||| |||| || |||||| |||||||| ||||||| ||||||| |||||||||||||||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaat 49659569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 18513173 - 18513287
Alignment:
Q  46 acctatgaagcatggacacttctaatattagg--tgtcctggtgtcggacacgcgttggtgtctgacacca-----acacctatggttacactgaattat 138  Q
    |||||||||||| ||||||| || | ||||||  |||||||||||||||||| ||| |||||| ||||| |     |||| |||| ||||| ||||||||    
T  18513173 acctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacacaacactgacacatatgattacattgaattat 18513272  T
Q  139 atcattttctcaaat 153  Q
     ||||||||||||||    
T  18513273 gtcattttctcaaat 18513287  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 33950218 - 33950149
Alignment:
Q  84 ggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||  |||||||||||||||||||| |||| |||| ||||| | |||||| | ||||||||||||    
T  33950218 ggtgtcgggtacgcgttggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaat 33950149  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 20743284 - 20743324
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaat 20743324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Complemental strand, 10133797 - 10133755
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacc 119  Q
    |||||||||||||||||||||||  |||||||||||| |||||    
T  10133797 gtgtcctggtgtcggacacgcgtcagtgtctgacaccgacacc 10133755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 31243556 - 31243594
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaat 31243594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 15835633 - 15835677
Alignment:
Q  102 gtgtctgacaccaacacctatggttacactgaattatatcatttt 146  Q
    ||||||||||||||||| |||| |||||| ||||||||| |||||    
T  15835633 gtgtctgacaccaacacatatgattacacggaattatataatttt 15835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 12100357 - 12100290
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattt 145  Q
    |||||| ||||||||||||||||| ||||| |||| | ||||||||  |||||||||||||||||||||    
T  12100357 gtgtcccggtgtcggacacgcgttagtgtcagaca-cgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 20691383 - 20691332
Alignment:
Q  102 gtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||||| |||| |||| |||||||||||||| ||||||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaat 20691332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 153
Target Start/End: Complemental strand, 21149149 - 21149080
Alignment:
Q  84 ggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||| ||||| |||||||||| |||| | ||| || || |||||||||||||| ||||||||||||||    
T  21149149 ggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaat 21149080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 25074875 - 25074802
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacac-----caacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||||||||||||||| |||||     |||| |||||| ||||||| |||||| ||||||||||||||    
T  25074875 gtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgtcattttctcaaat 25074802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 24205012 - 24205087
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||||||||||||||||  ||||| |||| | |||| |||  |||||||| ||||| ||||||||||||||    
T  24205012 gtgtcctggtgtcggacacgcgtcagtgtccgaca-cgacacttataattacactgtattatgtcattttctcaaat 24205087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 25892511 - 25892473
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  25892511 acacctatgattacactgaattatatcattttcttaaat 25892473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 40150567 - 40150617
Alignment:
Q  103 tgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||| |||||| |||| |||| ||||| |||||||||||||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaat 40150617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 12704622 - 12704703
Alignment:
Q  77 gtgtcctggtgtcggacacgcgttggtgtctgacac-----caacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||| ||||||||||||| ||||||||||| |||||     | ||||||||| ||||| |||||||| ||||||| ||||||    
T  12704622 gtgttctggtgtcggacatgcgttggtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaat 12704703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 15864913 - 15864846
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||| |||||| || |||||| ||||| | |||||||| ||||||| |||||||||||||| ||||||    
T  15864913 gtgtcagacacgtgtcggtgtccgacacga-cacctatgattacactaaattatatcattttttcaaat 15864846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 25652037 - 25652077
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  25652037 caacacctataactacactgaattatatcattttctcaaat 25652077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 25544532 - 25544494
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  25544532 acacctatgattacactgaattatatcattttctcaaat 25544494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 2415381 - 2415330
Alignment:
Q  102 gtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||| |||||||||| ||| |||||||| |||||||| ||||||||||||    
T  2415381 gtgtctcacaccaacacatatagttacacttaattatataattttctcaaat 2415330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 23354660 - 23354698
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  23354660 acacctatgattacactaaattatatcattttctcaaat 23354698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 34006928 - 34007037
Alignment:
Q  46 acctatgaagcatggacacttctaatattaggtgtcct--ggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcat 143  Q
    |||||||||||| ||||||| ||   |||||||||  |  |||||| ||||||  | ||||||  ||||| ||||||||| |||||||||||||| |||     
T  34006928 acctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaa 34007027  T
Q  144 tttctcaaat 153  Q
    ||||||||||    
T  34007028 tttctcaaat 34007037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 12748737 - 12748697
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||||| |||||||||| ||| ||||||||||||||    
T  12748737 caacacctatgattacactgaactatgtcattttctcaaat 12748697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 30563462 - 30563422
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||| |||||| |||||||| ||||||||||||||    
T  30563462 caacacctatagttacattgaattatgtcattttctcaaat 30563422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 11412739 - 11412811
Alignment:
Q  78 tgtcctggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctca 150  Q
    |||||| |||||||||||  |||||||||  ||||| ||||||||| | ||| |||||||| |||||||||||    
T  11412739 tgtcctagtgtcggacacatgttggtgtccaacaccgacacctatgatcacattgaattatgtcattttctca 11412811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 42325616 - 42325573
Alignment:
Q  110 caccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||    
T  42325616 caccaacacatattgttacactgaattatgtcattttctcaaat 42325573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 6574042 - 6573996
Alignment:
Q  113 caacacctatggttacactgaattatatcattttctcaaatgatcat 159  Q
    ||||||||||| ||||||| |||||||||||| |||||||| |||||    
T  6574042 caacacctatgattacactaaattatatcattgtctcaaattatcat 6573996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 42004920 - 42004993
Alignment:
Q  85 gtgtcggacacgcgttggtgtctgacacc-----aacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||| |||| |||||| ||||||     |||||||||| ||||||| |||||| ||||||||||||||    
T  42004920 gtgtcggacatgcgtcggtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaat 42004993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 56973 - 56935
Alignment:
Q  115 acacctatggttacactgaattatatcattttctcaaat 153  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  56973 acacttatgattacactgaattatatcattttctcaaat 56935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 90925 - 90856
Alignment:
Q  83 tggtgtcggacacgcgttggtgtctgacaccaacacctatggttacactgaattatatcattttctcaaat 153  Q
    |||||||||||||| |||| ||||||||| | |||  |||  |||||||||||||||| ||||||||||||    
T  90925 tggtgtcggacacgtgttg-tgtctgacatcgacatatataattacactgaattatatgattttctcaaat 90856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 8063 - 8099
Alignment:
Q  117 acctatggttacactgaattatatcattttctcaaat 153  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  8063 acctatgtttacactgaattatgtcattttctcaaat 8099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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