View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_high_15 (Length: 346)
Name: NF3196_high_15
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 3902177 - 3902496
Alignment:
| Q |
11 |
gaacatttagtcctagttaaatccctaattctttagtgaacctaaacttcaatatacaagaatttttaatctcaagtattcacaaaataaacttctgttt |
110 |
Q |
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| T |
3902177 |
gaacatttagtcctagttaaatccctacttctttagtgaacctaaacttcaatatacaagaatttttaatctcaaggattcacaaaataaacttctattt |
3902276 |
T |
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| Q |
111 |
caaactatgaaccattaattatttaattggtgatcaagtaataaaaatcattccgaatagagatagaaaaacaactcaaatatattaattaattaaaatc |
210 |
Q |
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| T |
3902277 |
caaactatgaaccatgaatcatttaattggtgatcaagtaataaaaatcattccgaatagagatagaaaaacaactcaaatatattaattaattaaaatc |
3902376 |
T |
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| Q |
211 |
atctttaactaaatcataacataaaaggcttcatcaaaatcaactcatctattattggacgtttagatactcgaaataatagacataaattctacaaaag |
310 |
Q |
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| T |
3902377 |
atctttaactaaattataacataaaaggcttcatcaaaatcaactcatctattattggagttttagatactcgaaataatagacataaattcaacaaaag |
3902476 |
T |
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| Q |
311 |
ataaaaattacacatgaatt |
330 |
Q |
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| T |
3902477 |
ataaaaattacacatgaatt |
3902496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 3904798 - 3904933
Alignment:
| Q |
68 |
aagaatttttaatctcaagtattcaca----aaataaacttctgtttcaaactatgaaccattaattatttaattggtgatcaagtaataaaaatcattc |
163 |
Q |
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| T |
3904798 |
aagaatttttaatctcaagcattcatatataaaataaacttccgtttcaaactatgaaccatgaatcattcaattggtgatcaagtgataaaaatcatta |
3904897 |
T |
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| Q |
164 |
cgaatagagatagaaaaacaactcaaatatattaat |
199 |
Q |
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| T |
3904898 |
cgaatagagatagaaaaacaactcaaatatattaat |
3904933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 3904684 - 3904732
Alignment:
| Q |
11 |
gaacatttagtcctagttaaatccctaattctttagtgaacctaaactt |
59 |
Q |
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| T |
3904684 |
gaacatttaatcctagttaaatccctaattctttagtgaacctaaactt |
3904732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 3893816 - 3893877
Alignment:
| Q |
113 |
aactatgaaccattaattatttaattggtgatcaagtaataaaaatcattccgaatagagat |
174 |
Q |
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| T |
3893816 |
aactatgaaccataaatcattcaattggtgatcaagtgataaaaatcattacgaatagagat |
3893877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 3893889 - 3893986
Alignment:
| Q |
231 |
ataaaaggcttcatcaaaatcaactcatctattattggacgtttagatactcgaaataatagacataaattctacaaaagataaaaattacacatgaa |
328 |
Q |
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||||| || ||||||||||||||||||||| || |||| |||||| |||||| |||| ||||| |||||| | |||||||||||||||||||||| |
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| T |
3893889 |
ataaagggtttcatcaaaatcaactcatcttataatggaggtttagctactcgttataaaagacaaaaattcaaagaaagataaaaattacacatgaa |
3893986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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