View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_high_17 (Length: 328)
Name: NF3196_high_17
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 39 - 297
Target Start/End: Complemental strand, 14009374 - 14009116
Alignment:
| Q |
39 |
agcatagagcatcacgtcaaatttttaacccaacaccttccttgcccaggcagaagctacttgccttcaacttgcccatataaaaataatgtacattgag |
138 |
Q |
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| T |
14009374 |
agcatagagcatcacgtcaaatttttaacccaacaccttccttgcccaggcagaagctacttgccttcaacttgcccatataaaaataatgtacattgag |
14009275 |
T |
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| Q |
139 |
gaaaggatctatatacttattatttttcatttctaccttgtctttcactttacattgattaaggtcctgctgacacaaagataagtataagcatcagttc |
238 |
Q |
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| T |
14009274 |
gaaaggatctatatacttattatttttcatttctaccttgtctttcactttacattgattaaggtcctgctgacacaaagataagtataagcatcagttt |
14009175 |
T |
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| Q |
239 |
taaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatcatcacagct |
297 |
Q |
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| T |
14009174 |
taaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatcatcacagct |
14009116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 40910754 - 40910665
Alignment:
| Q |
197 |
ttaaggtcctgctgacacaaagataagtataagcatcagttct-aaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatc |
288 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
40910754 |
ttaaggtactgctgacacaaagataagtatgtgcatcagttgtaaaagaagttaaatatgatctgataca---aacaatgaaatatgacaatc |
40910665 |
T |
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