View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_high_19 (Length: 310)
Name: NF3196_high_19
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 28678674 - 28678960
Alignment:
| Q |
2 |
accaccattgatccatctatataacaataaactgtgtcaaacatttgaaatgctctcacacatacttcttgatccaacttttctgataacaaaatatgat |
101 |
Q |
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| T |
28678674 |
accaccattgatccatctatataacaataaactgtgtcaaacatttgaaatgctctcacacatacttcttgatccaacttttctgataacaaaatatgat |
28678773 |
T |
|
| Q |
102 |
gacagatcatcagagaattcaccctgctagtgatttggagtcacaaaccaaacctacagttcctttgattcctagaaacacttcaaaatccgatcgacgc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28678774 |
gacagatcatcagagaattcaccctgctagtgatttggagtcacaaaccaaacctacagttcctttgattcctagaaacacttcaaaatccgatcgacgc |
28678873 |
T |
|
| Q |
202 |
agtccctcatatccacctcttccgaaacgccactttccagttagacatactcatccaccaaagaagaaaagaagttgctgctgcagg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28678874 |
agtccctcatatccacctcttccgaaacgccactttccagttagacatactcatccaccaaagaagaaaagaagttgctgctgcagg |
28678960 |
T |
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