View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3196_high_2 (Length: 676)
Name: NF3196_high_2
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 516
Target Start/End: Complemental strand, 14369444 - 14368941
Alignment:
| Q |
17 |
tctaaagacatctccagcagctgataaactagggttgccgtaggcagcaccatctatgttacatttaatccaggattggagaggaggatgccacatcacc |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||| || | |||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||| |
|
|
| T |
14369444 |
tctaaagacacctccagcagctgataaaccagggtttcccttggcagcaccatctatgttacatttgatc-aggaatggagaggagggtgccacatcacc |
14369346 |
T |
|
| Q |
117 |
tctttgataatcggtgctttagggtggtgaatagaaacattaaaaatcttgatca-----aagtctctgatagaattagaagatgttttctttgttgtct |
211 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
14369345 |
tctttgataatcggtgctctagggtggtgaacagaaacattaaaattcttgatcagggtaaagtctctgattgaattagaagatgttttctttgttgtgt |
14369246 |
T |
|
| Q |
212 |
ttcctgttagggctgtgctcgaaataatcacagaaatggaagatttccagttgatggttttgcgattaaatctagctcagtttctagcattccatatgac |
311 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14369245 |
ttcatgctagggctgtgctcgaaataatcatggaaatggaagatttccagttgatggttttgctattaaatctagcttggtttctagcattccatatgac |
14369146 |
T |
|
| Q |
312 |
ataaaaaagattaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagtta |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
14369145 |
ataaaaaagatcaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaagtttccacacatcttctaaacaagagaagtta |
14369046 |
T |
|
| Q |
412 |
agagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacata |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14369045 |
agagataaattaagacaagatgctaaccaagaccagattctgatggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacata |
14368946 |
T |
|
| Q |
512 |
aatta |
516 |
Q |
| |
|
||||| |
|
|
| T |
14368945 |
aatta |
14368941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 355 - 669
Target Start/End: Original strand, 21818076 - 21818390
Alignment:
| Q |
355 |
tgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagaccagattctga |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21818076 |
tgtggtgaccaagataaatcacaaaatttccgcacatcttctaaacaagagaagttaagagataaattaagacaagatgctaaccaagatcagattctga |
21818175 |
T |
|
| Q |
455 |
tggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaatagagggaaagctgcagcctctttgtttcaagtt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21818176 |
tggagtattcacagttgaagaacaaatggaatgaggattcttcatgtttgtaacataaattacaaatagagggaaagctgcagcctctttgtttcaagtt |
21818275 |
T |
|
| Q |
555 |
ctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatctacactccatatcgttttggcccaacgaagctct |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21818276 |
ctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtgggatatctacactccatatcgttttggcccaatgaagctct |
21818375 |
T |
|
| Q |
655 |
tgaaattgatgatgt |
669 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
21818376 |
tgaaattgatgatgt |
21818390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 46117506 - 46117587
Alignment:
| Q |
316 |
aaaagattaaccaaagctgatagcaccaccactttgcattgtggtgaccaagataaatcacaaaatttccgcacatcttcta |
397 |
Q |
| |
|
||||||||||| ||||||| || || || || || |||||||| ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
46117506 |
aaaagattaacaaaagctggtaagacaactaccttacattgtggagaccaagctaaatcacaaattttccgaacatcttcta |
46117587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 645
Target Start/End: Complemental strand, 43581183 - 43581139
Alignment:
| Q |
601 |
gattttgaaggtggtatatctacactccatatcgttttggcccaa |
645 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
43581183 |
gattttgaaggtggaatatcaacactccatattgtattggcccaa |
43581139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 669
Target Start/End: Original strand, 16010582 - 16010698
Alignment:
| Q |
553 |
ttctcatctgttggcactttgttgtgcttcaatctccaaatgaacatggattttgaaggtggtatatctacactccatatcgttttggcccaacgaagct |
652 |
Q |
| |
|
||||||||||| || | |||||||| | |||||||||||| || | |||||||| || || | ||| |||||||| || |||||||||||| | || | |
|
|
| T |
16010582 |
ttctcatctgtaggaattttgttgtacatcaatctccaaacaaatagagattttgagggagggacatcaacactccaaatggttttggcccaatggagat |
16010681 |
T |
|
| Q |
653 |
cttgaaattgatgatgt |
669 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
16010682 |
cttgaaactgatgatgt |
16010698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 21852652 - 21852793
Alignment:
| Q |
244 |
gaaatggaagatttccagttgatggttttgcgattaaatctagctcagtttctagcattccatatgacataaaaaagattaaccaaagctgatagcacca |
343 |
Q |
| |
|
||||||| ||| ||||| |||||| || || |||||||||||| |||||| ||| ||| ||| || |||||||||||||||||| | || || | |
|
|
| T |
21852652 |
gaaatggcagacttccaattgatgattgtgttgttaaatctagcttggtttctgacataccagatggaattaaaaagattaaccaaagcataaaggacaa |
21852751 |
T |
|
| Q |
344 |
ccactttgcattgtggtgaccaagataaatcacaaaatttcc |
385 |
Q |
| |
|
||||||||||||| || ||||| || || ||||||| ||||| |
|
|
| T |
21852752 |
ccactttgcattgaggagaccatgacaattcacaaattttcc |
21852793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University