View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3196_low_1 (Length: 685)

Name: NF3196_low_1
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3196_low_1
NF3196_low_1
[»] chr6 (2 HSPs)
chr6 (54-189)||(2533690-2533825)
chr6 (83-137)||(2551234-2551288)
[»] chr4 (2 HSPs)
chr4 (333-468)||(39256154-39256292)
chr4 (200-335)||(39255963-39256100)


Alignment Details
Target: chr6 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 2533690 - 2533825
Alignment:
Q  54 tttatcatcatgaccagcaaagtcataaccttcagccttcttaacagatttctttttgtcaggaaagccttgggagttcaaatccctactgttgtcaaga 153  Q
    ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||| ||||||    
T  2533690 tttatcatcatgagcagcaaagtcataagcttcagtcttcttaacagatttctttttgtcaggaaagcgttgtgagtgcaaatccctgctgttatcaaga 2533789  T
Q  154 tcatgttctctgtcatcgtgatcgcgcatccttcta 189  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2533790 tcatgttctctatcatcgtgatcgcgcatccttcta 2533825  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 2551234 - 2551288
Alignment:
Q  83 cttcagccttcttaacagatttctttttgtcaggaaagccttgggagttcaaatc 137  Q
    |||||||||||||||||||||||||||||| |||| ||| | | |||||||||||    
T  2551234 cttcagccttcttaacagatttctttttgttaggagagcgtagtgagttcaaatc 2551288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 333 - 468
Target Start/End: Original strand, 39256154 - 39256292
Alignment:
Q  333 tttgtaatctgaaaagcccccgccggcgaagacatcgatggttgtttgt---tgtcgtcgctagtgagtgaagaaattaaagaattaccagcacaagagt 429  Q
    ||||||||||||||||| |||||||| || |||||||| ||||||||||   ||||||||| ||||||||||||||| ||||||||||||||| ||||||    
T  39256154 tttgtaatctgaaaagcacccgccggagacgacatcgacggttgtttgttgttgtcgtcgccagtgagtgaagaaatgaaagaattaccagcagaagagt 39256253  T
Q  430 aagaaaaattaagagtttttgaagaatcatttctcttga 468  Q
    | |||||||||||||||||||||||||||||||||||||    
T  39256254 atgaaaaattaagagtttttgaagaatcatttctcttga 39256292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 39255963 - 39256100
Alignment:
Q  200 aataaagggttatgattcttttgaagaaagttttggtaaaatatgaagatttcacacacnnnnnnnnggaacaatgacaactgctagaagaactaccaca 299  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||        |||||||||||||| ||||||||||||||||||    
T  39255963 aataaagggttatgattcttttgaagaaagtttaggtgaaatatgaagatttcacatacctttttttggaacaatgacaacggctagaagaactaccaca 39256062  T
Q  300 cttaccagaaccc--agttccagagctacacttccttt 335  Q
    ||| |||||||||  |||| ||||||||||||||||||    
T  39256063 ctttccagaacccaaagtttcagagctacacttccttt 39256100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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