View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3196_low_10 (Length: 398)
Name: NF3196_low_10
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 37029392 - 37029020
Alignment:
| Q |
1 |
tttccaccaaactctccaatatatacataaatccagcatggaatgaaaattgtcatcgtcatgcgtaggaacgtcgttgattttggaatcgttcattgaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
37029392 |
tttccaccaaactctcaaatatattcataaatccagcatggaaggaaaattgtcatcgccatgcagaggaacgtctttgagtttgggatcgttcattgaa |
37029293 |
T |
|
| Q |
101 |
agttaaaataatatcgattagcaactgacaaagtgggtttggtaagtatgttaacacggtaaaaaagaaaatacggatgtgtgtcctcttggtgttcatc |
200 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37029292 |
agttaaa----tatcgattatcaactgacaaagtgg--------------ttaacacggtaaaaaagaaaatacggatgtgtgtcctcttggtgttcatc |
37029211 |
T |
|
| Q |
201 |
tgcagcaccaataaataacttttgctttcttaggatataatttaaagaatttatcgaaataaactaaaaataacttataaatatgtgcaaagacttcctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37029210 |
tgcagcaccaataaataacttttgctttcttaggatataatttaaagaatttatcgaaataaactaaaaataacttataaatatgtgcaaagactttctg |
37029111 |
T |
|
| Q |
301 |
agttttctcaaacactctaaaagtggtttacgtccgttgataaactcaaaaataaaaagttcataaattaatacaatcacatcctttgtta |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37029110 |
agttttctcaaacactctaaaagtggtttacgtccgttgataaactcaaaaataaaaagttcataaattaatacaatcacatcctttgtta |
37029020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University