View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3196_low_12 (Length: 382)

Name: NF3196_low_12
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3196_low_12
NF3196_low_12
[»] chr4 (12 HSPs)
chr4 (24-351)||(46882408-46882735)
chr4 (278-364)||(48007236-48007322)
chr4 (278-364)||(55157627-55157713)
chr4 (278-352)||(13557448-13557522)
chr4 (278-344)||(8346266-8346332)
chr4 (277-339)||(39134524-39134586)
chr4 (278-364)||(46883040-46883125)
chr4 (313-354)||(46882743-46882784)
chr4 (280-310)||(30213206-30213236)
chr4 (278-310)||(8179908-8179940)
chr4 (278-310)||(24972268-24972300)
chr4 (316-364)||(46883136-46883184)
[»] chr7 (8 HSPs)
chr7 (277-364)||(4125480-4125567)
chr7 (278-355)||(10954402-10954479)
chr7 (278-344)||(1076308-1076374)
chr7 (278-352)||(9691071-9691145)
chr7 (277-328)||(24507844-24507895)
chr7 (278-323)||(13298777-13298822)
chr7 (278-336)||(10954581-10954639)
chr7 (278-328)||(21995275-21995325)
[»] chr5 (8 HSPs)
chr5 (278-360)||(38378220-38378301)
chr5 (277-343)||(7725538-7725604)
chr5 (278-344)||(8383971-8384037)
chr5 (278-364)||(38378785-38378870)
chr5 (278-341)||(33001029-33001092)
chr5 (278-328)||(9932234-9932284)
chr5 (278-310)||(5653785-5653817)
chr5 (278-354)||(40090801-40090876)
[»] chr1 (10 HSPs)
chr1 (278-364)||(52053809-52053895)
chr1 (278-344)||(33024774-33024842)
chr1 (299-342)||(11978510-11978553)
chr1 (278-319)||(18459738-18459779)
chr1 (278-310)||(10544168-10544200)
chr1 (278-310)||(17414743-17414775)
chr1 (278-310)||(17415354-17415386)
chr1 (278-310)||(18459585-18459617)
chr1 (278-310)||(33024673-33024705)
chr1 (278-310)||(49915876-49915908)
[»] chr6 (3 HSPs)
chr6 (278-344)||(17945263-17945329)
chr6 (277-354)||(15531137-15531214)
chr6 (278-346)||(10091360-10091424)
[»] scaffold0276 (1 HSPs)
scaffold0276 (277-328)||(2087-2138)
[»] chr2 (4 HSPs)
chr2 (297-354)||(3350813-3350870)
chr2 (278-328)||(32447903-32447953)
chr2 (278-344)||(18176740-18176808)
chr2 (278-310)||(18176877-18176909)
[»] chr8 (3 HSPs)
chr8 (292-364)||(10719574-10719646)
chr8 (278-320)||(8051921-8051963)
chr8 (277-344)||(23679592-23679661)
[»] chr3 (3 HSPs)
chr3 (277-345)||(931610-931678)
chr3 (278-310)||(9397104-9397136)
chr3 (278-322)||(34805762-34805806)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 24 - 351
Target Start/End: Original strand, 46882408 - 46882735
Alignment:
Q  24 acaaaaccttttaggcacgtttatttatctatacttatcttataaaaaatatatatggttttagcttagttcctttaattgaatttaatctttcatttaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  46882408 acaaaaccttttaggcacgtttatttatctatacttatcttataaaaaatatatatggttttagcttagttcctttatttgaatttaatcattcatttaa 46882507  T
Q  124 actactatatatataattttatcatttttcttacaacaactaagcatggaaatgaggctggatggagataggttttaccttccatgtctctatccccgac 223  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  46882508 actactatatatataattttatcatttttattacaacaactaaacatggaaatgaggctggatggagataggttttaccttccacgtctctatccccgac 46882607  T
Q  224 tctcgtatatttacatgttatcccactcatatgcaatagatgagaaattgaatctattagaatataaaatatttattgtataaattagtagtatattgta 323  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  46882608 tctcgtatgcttacatgttatcccactcatatgcaatagatgagaaattgaatctattagaatataaaatatttaatgtataaattattagtatattgta 46882707  T
Q  324 tattacttaaagataattgaggctcaag 351  Q
    ||||||||||||||||||||||||||||    
T  46882708 tattacttaaagataattgaggctcaag 46882735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 48007322 - 48007236
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||| ||| ||||||||||||| ||||||||  |||||||    
T  48007322 tattagaatataaaatattcattgtataaattattaatatattgtatattagttagagataattgaggcacaagttagatatacttg 48007236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 55157627 - 55157713
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    ||||||||||||||||||| ||||||||||||  || |||||||||||||| | | ||||||||||||| ||||||||  |||||||    
T  55157627 tattagaatataaaatattcattgtataaattgttaatatattgtatattagtaatagataattgaggcacaagttagatatacttg 55157713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 13557448 - 13557522
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagt 352  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |   |||||||||||| ||||||    
T  13557448 tattagaatataaaatattcattgtgtaaattattagtatattgtatattattccgagataattgaggatcaagt 13557522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 8346266 - 8346332
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgag 344  Q
    ||||| ||||||||||||| ||||||||||||| ||||||| | ||||||| ||| |||||||||||    
T  8346266 tattaaaatataaaatattcattgtataaattattagtatactatatattagttagagataattgag 8346332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 39134586 - 39134524
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataa 339  Q
    |||||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||| ||||||    
T  39134586 ctattagaatataaaatattcattatataaattattagtacattgtatattagttagagataa 39134524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 46883040 - 46883125
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    ||||||||||| ||||||| | ||||||||| | ||| ||||||||||||| ||| ||||||||||||  |||||| | ||||||||    
T  46883040 tattagaatattaaatattcaatgtataaat-attagcatattgtatattagttagagataattgaggtccaagttggagatacttg 46883125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 46882743 - 46882784
Alignment:
Q  313 agtatattgtatattacttaaagataattgaggctcaagtta 354  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  46882743 agtatattgtatattagttaaagataaatgaggctcaagtta 46882784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 310
Target Start/End: Original strand, 30213206 - 30213236
Alignment:
Q  280 ttagaatataaaatatttattgtataaatta 310  Q
    |||||||||||||||||||||||||||||||    
T  30213206 ttagaatataaaatatttattgtataaatta 30213236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 8179940 - 8179908
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  8179940 tattagaatataaaatattcattgtataaatta 8179908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 24972300 - 24972268
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  24972300 tattagaatataaaatattcattgtataaatta 24972268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 46883136 - 46883184
Alignment:
Q  316 atattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    |||||||| |||| ||| ||||||||||||||||||||||  |||||||    
T  46883136 atattgtacattagttagagataattgaggctcaagttagacatacttg 46883184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 4125480 - 4125567
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    |||||||||||||||||||| ||||||||||||| || |||||||||||||| ||| |||||| |||||| ||||||||  |||||||    
T  4125480 ctattagaatataaaatattcattgtataaattattaatatattgtatattagttagagataactgaggcacaagttagatatacttg 4125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 10954402 - 10954479
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttag 355  Q
    ||||||||||||||||||||||||||||| ||| || |||||||||||||| ||| ||||||||||||  ||||||||    
T  10954402 tattagaatataaaatatttattgtataatttattaatatattgtatattagttagagataattgaggtacaagttag 10954479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 1076374 - 1076308
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgag 344  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| | | |||||||||||    
T  1076374 tattagaatataaaatatttatagtataaattattagtatattgtatattagtcatagataattgag 1076308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 9691071 - 9691145
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagt 352  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |   |||||||||||| ||||||    
T  9691071 tattagaatataaaatattcattgtgtaaattattagtatattgtatattattccgagataattgaggatcaagt 9691145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 24507895 - 24507844
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatatta 328  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||||||    
T  24507895 ctattagaatataaaatattcattgtataaattattagtttattgtatatta 24507844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 13298777 - 13298822
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgta 323  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||    
T  13298777 tattagaatataaaatattcattgtataaattattagtatattgta 13298822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 10954639 - 10954581
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaaga 336  Q
    ||||||||||||||||||| ||||  ||| ||| || |||||||||||||| |||||||    
T  10954639 tattagaatataaaatattcattgattaatttattaatatattgtatattagttaaaga 10954581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 21995325 - 21995275
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatatta 328  Q
    |||||||||||| |||||| ||| ||||| ||| |||||||||||||||||    
T  21995325 tattagaatatacaatattcattatataagttattagtatattgtatatta 21995275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 38378220 - 38378301
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggata 360  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||| |||||||||| |||||||| ||||    
T  38378220 tattagaatataaaatattcattgtataaattattagtatatt-tatattagttaaaggtaattgaggcccaagttagagata 38378301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 7725538 - 7725604
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattga 343  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||    
T  7725538 ctattagaatataaaatattcattgtataaattattagtatattgtatattagttagagatatttga 7725604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 8383971 - 8384037
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgag 344  Q
    ||||||||||||||||||| ||||||||||||| || ||||||||||||||  || |||||||||||    
T  8383971 tattagaatataaaatattcattgtataaattattaatatattgtatattagctatagataattgag 8384037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 38378785 - 38378870
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    |||||||||||||| |||| |||||||| |||| ||||||||| ||||||| ||| |||||||||||| |||| |||| ||||||||    
T  38378785 tattagaatataaagtattcattgtatagattattagtatatt-tatattagttagagataattgaggttcaatttagagatacttg 38378870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 341
Target Start/End: Original strand, 33001029 - 33001092
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataatt 341  Q
    ||||||||| ||||||||||||||||||||||| || |||||| ||||||| | | ||||||||    
T  33001029 tattagaatttaaaatatttattgtataaattattaatatattatatattagtaagagataatt 33001092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 9932234 - 9932284
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatatta 328  Q
    ||||| ||||||||||||||||| |||||||||  ||||||||||||||||    
T  9932234 tattataatataaaatatttattatataaattatcagtatattgtatatta 9932284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 5653817 - 5653785
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||| |||||||||||||||||    
T  5653817 tattagaatataaaagatttattgtataaatta 5653785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 40090876 - 40090801
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagtta 354  Q
    ||||| ||||||||||||| ||| |||||||||   |||| || ||||||| ||| ||||||||||||| |||||||    
T  40090876 tattaaaatataaaatattcatt-tataaattataggtatgttatatattagttagagataattgaggcgcaagtta 40090801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 52053895 - 52053809
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    ||||||||||||||||||| ||||||||||||| || |||||||||||||  ||| ||||||||||| | ||||||||  |||||||    
T  52053895 tattagaatataaaatattcattgtataaattattaatatattgtatattggttagagataattgagccacaagttagatatacttg 52053809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 33024842 - 33024774
Alignment:
Q  278 tattagaatataaaa-tatttattgtataaattagt-agtatattgtatattacttaaagataattgag 344  Q
    ||||||||||||||| |||| ||||||||||||| | |||||||||||||||| ||| ||||| |||||    
T  33024842 tattagaatataaaaatattgattgtataaattaattagtatattgtatattagttagagatatttgag 33024774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 11978510 - 11978553
Alignment:
Q  299 ttgtataaattagtagtatattgtatattacttaaagataattg 342  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||    
T  11978510 ttgtataaattattagtatattgtatattaattagagataattg 11978553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 18459779 - 18459738
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatat 319  Q
    ||||||||||||||||||| ||||||||||||| ||| ||||    
T  18459779 tattagaatataaaatattcattgtataaattattagaatat 18459738  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 10544200 - 10544168
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  10544200 tattagaatataaaatattcattgtataaatta 10544168  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 17414743 - 17414775
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  17414743 tattagaatataaaatattcattgtataaatta 17414775  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 17415386 - 17415354
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  17415386 tattagaatataaaatattcattgtataaatta 17415354  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 18459617 - 18459585
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  18459617 tattagaatataaaatattcattgtataaatta 18459585  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 33024673 - 33024705
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  33024673 tattagaatataaaatattcattgtataaatta 33024705  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 49915876 - 49915908
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  49915876 tattagaatataaaatattcattgtataaatta 49915908  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 17945329 - 17945263
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgag 344  Q
    ||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||  ||||||||||    
T  17945329 tattagaatataaaatattcattgtataaattatttgtatattgtatattagttagtgataattgag 17945263  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 277 - 354
Target Start/End: Original strand, 15531137 - 15531214
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagtta 354  Q
    |||||||||||||||| ||| ||||||||||||| |||| |||||||||||| ||| | ||||||||||  |||||||    
T  15531137 ctattagaatataaaacattcattgtataaattattagtgtattgtatattatttagaaataattgaggaccaagtta 15531214  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 346
Target Start/End: Complemental strand, 10091424 - 10091360
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgaggc 346  Q
    |||||||||||||||||||    |||||||||| || ||||||||||| || ||| |||||||||||||    
T  10091424 tattagaatataaaatatt----gtataaattattaatatattgtataataattagagataattgaggc 10091360  T

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Target: scaffold0276 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 2138 - 2087
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatatta 328  Q
    |||||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  2138 ctattagaatataaaatattcattgtataaattattaatatattgtatatta 2087  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 3350870 - 3350813
Alignment:
Q  297 tattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagtta 354  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||||  |||||||    
T  3350870 tattgtataaattattagtatattgtatattatttagagataattgaggaccaagtta 3350813  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 32447903 - 32447953
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgtatatta 328  Q
    ||||||||||||||||||| |||||||| |||| || ||||||||||||||    
T  32447903 tattagaatataaaatattcattgtatagattattaatatattgtatatta 32447953  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 344
Target Start/End: Original strand, 18176740 - 18176808
Alignment:
Q  278 tattagaatataaaa-tatttattgtataaattagt-agtatattgtatattacttaaagataattgag 344  Q
    ||||||||||||||| |||| ||||||||||||| | |||||||||||||||| ||| ||||| |||||    
T  18176740 tattagaatataaaaatattgattgtataaattaattagtatattgtatattagttagagatatttgag 18176808  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 18176909 - 18176877
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    ||||||||||||||||||| |||||||||||||    
T  18176909 tattagaatataaaatattcattgtataaatta 18176877  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 10719646 - 10719574
Alignment:
Q  292 atatttattgtataaattagtagtatattgtatattacttaaagataattgaggctcaagttagggatacttg 364  Q
    ||||| ||||||||||||| |||||||| |||||||| ||| ||||||||||||  |||||||  ||||||||    
T  10719646 atattcattgtataaattattagtatatagtatattatttagagataattgaggaccaagttaaagatacttg 10719574  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 8051963 - 8051921
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatatt 320  Q
    ||||||||||||||||||| ||||||||||||| || ||||||    
T  8051963 tattagaatataaaatattcattgtataaattattaatatatt 8051921  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 344
Target Start/End: Original strand, 23679592 - 23679661
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattg--tatattacttaaagataattgag 344  Q
    |||||| ||||||||||||| ||||||||||||| ||  ||||||  ||||||| ||| |||||||||||    
T  23679592 ctattaaaatataaaatattcattgtataaattattaacatattgtatatattagttagagataattgag 23679661  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 345
Target Start/End: Original strand, 931610 - 931678
Alignment:
Q  277 ctattagaatataaaatatttattgtataaattagtagtatattgtatattacttaaagataattgagg 345  Q
    ||||||||||||||| |||| |||| |||||||| || |||||| |||| || ||| ||||||||||||    
T  931610 ctattagaatataaagtattcattgcataaattattattatattatatactatttagagataattgagg 931678  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 310
Target Start/End: Original strand, 9397104 - 9397136
Alignment:
Q  278 tattagaatataaaatatttattgtataaatta 310  Q
    |||||||||| ||||||||||||||||||||||    
T  9397104 tattagaataaaaaatatttattgtataaatta 9397136  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 322
Target Start/End: Original strand, 34805762 - 34805806
Alignment:
Q  278 tattagaatataaaatatttattgtataaattagtagtatattgt 322  Q
    ||||||||||||||||| | ||||||||||||| || ||||||||    
T  34805762 tattagaatataaaatactcattgtataaattattaatatattgt 34805806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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