View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_13 (Length: 369)
Name: NF3196_low_13
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 29603357 - 29603569
Alignment:
| Q |
1 |
actatgaagcaatgacatagacacgaacatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgctttctgacaactc |
100 |
Q |
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| T |
29603357 |
actatgaagcaatgacatagacacgaacatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgctttctgacaactc |
29603456 |
T |
|
| Q |
101 |
taattgcaaatcaactattgtaaggatgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaatcataaagtatgaa |
200 |
Q |
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| T |
29603457 |
taattgcaaatcaactattgtaaggatgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaatcataaagtatgaa |
29603556 |
T |
|
| Q |
201 |
atgaaaaactcag |
213 |
Q |
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||||||||||||| |
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| T |
29603557 |
atgaaaaactcag |
29603569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 29603556 - 29603671
Alignment:
| Q |
236 |
aatgaaaaactcagcactgcgccactctccaaaaaacctatttgatatgcttttcttaccactattccattgtgtccttaaataattaaatacatcgcta |
335 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29603556 |
aatgaaaaactcagcactgtgccactctccaaaaaacctatttgatatgcttttcttaccactattccattgtgtctttaaataattaaatacatcgcta |
29603655 |
T |
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| Q |
336 |
ctatttcagagatagt |
351 |
Q |
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| T |
29603656 |
atatttcagagatagt |
29603671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 8921077 - 8921118
Alignment:
| Q |
2 |
ctatgaagcaatgacatagacacgaacatcgaacacaacact |
43 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
8921077 |
ctatgaaacaatgacatagacacgaacattaaacacaacact |
8921118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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