View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_18 (Length: 327)
Name: NF3196_low_18
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 327
Target Start/End: Complemental strand, 40676807 - 40676496
Alignment:
| Q |
16 |
aagaaggatcacaagaaggagaatgtgttctgttcatttccttcttgcacattattctccaacactcatattgtctttgaatagatgacacataccatgt |
115 |
Q |
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| T |
40676807 |
aagaaggatcacaagaaggagaatgtgttctgttcatttccttcttgcacattattctccaacactcatattgtctttgaatagatgacacataccatgt |
40676708 |
T |
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| Q |
116 |
tgctcctaaaacctgcactgacaaacacagcacataacacacaagttaactattatcaaaacattgtagtaattaaatttgatactgttaaataattaca |
215 |
Q |
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| T |
40676707 |
tgctcctaaaacctgcactgacaaacacaacacataacacacaagttaactattatcaaaacattgtagtaattaaatttgatactgttaaataattaca |
40676608 |
T |
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| Q |
216 |
tggctggccagcatgtagaaaccaagattgtacaatgcccctgctaaagcagttttggctataaggccgctagtctttaagattcgacgttgtaaagtaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40676607 |
tggctggccagcatgtagaaaccaagattgtacaatgcccctgctaaagcagttttggctataaggccgctagtctttaagattcgacgttgtaaaggaa |
40676508 |
T |
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| Q |
316 |
aaatctgaaaac |
327 |
Q |
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|||||||||||| |
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| T |
40676507 |
aaatctgaaaac |
40676496 |
T |
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