View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_20 (Length: 307)
Name: NF3196_low_20
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 59 - 289
Target Start/End: Complemental strand, 37013487 - 37013257
Alignment:
| Q |
59 |
gtgtagcaatgcacaagtgaactgttatggtgagagtgagataagagctgttgtccaaagataattacctacccatccaatttgtaaggatccttttgat |
158 |
Q |
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| T |
37013487 |
gtgtagcaatgcacaagtgaactgttatggtgagagtgagataagagctgttgtccaaagataattacctacccatccaatttgtaaggatccttttgat |
37013388 |
T |
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| Q |
159 |
gcaatttgcattaatttataatttattttctttttctggtctgtccatgtatagaaaacgttattcatattcatattatatagacaactctcttgcccgt |
258 |
Q |
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| T |
37013387 |
gcaatttgcattaatttataatttattttctttttctggtctgtccatgtatagaaaacgttattcatattcatattatatagacaactctcttgcccgt |
37013288 |
T |
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| Q |
259 |
gtatgttttgtccaagtatatatgtcagcgc |
289 |
Q |
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| T |
37013287 |
gtatgttttgtccaagtatatatgtcagcgc |
37013257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 37020155 - 37020115
Alignment:
| Q |
29 |
ttattctactaggata--ggaagtatcttaaagtgtagcaa |
67 |
Q |
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| T |
37020155 |
ttattctactaggatataggaagtatcttaaagtgtagcaa |
37020115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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