View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3196_low_24 (Length: 267)
Name: NF3196_low_24
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 250
Target Start/End: Complemental strand, 33392335 - 33392082
Alignment:
| Q |
2 |
aatttagaccaaatatatttaacttttaaaacattttttgtttatatttcattctagaggaagtataaaaata------gttattactccaatatgnnnn |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
33392335 |
aatttagaccaaatatatttaacttttgaaatattttttgtttatatttcattctagaggaagtataaagataaagatagttattactccaatatgaaaa |
33392236 |
T |
|
| Q |
96 |
nnngttcccaatnnnnnnngttaaatacttgaattcatatttgaccaaaaagataatagtagtaaaaaacaa-gctaatattagttataaatattgtttt |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||| | |||| |
|
|
| T |
33392235 |
aa-gttcccaataaaaaa-gttaaatacttgaattcatatttgaccaaaaagataatagtagtaaaaaaaaaagctaatactagttataaatactatttt |
33392138 |
T |
|
| Q |
195 |
tactcaccacttatcattcacagataggctcatagacatttcaaaatcctctcctt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33392137 |
tactcaccacttatcattcacagataggctcatagacatttcaaaatcctctcctt |
33392082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Original strand, 32664099 - 32664129
Alignment:
| Q |
36 |
tttttgtttatatttcattctagaggaagta |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32664099 |
tttttgtttatatttcattctagaggaagta |
32664129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University