View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_28 (Length: 250)
Name: NF3196_low_28
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_28 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 28601223 - 28600983
Alignment:
| Q |
10 |
aagaatattaccaacgacatgcacattagctttcaaagtgtagaaagcaagacaagacagtccaaagagctctcttggttcaacctaatctgaaaacaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601223 |
aagaatattaccaacgacatgcacattagctttcaaagtgtagaaagcaagacaagacagtccaaagagctctcttggttcaacctaatctgaaaacaat |
28601124 |
T |
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| Q |
110 |
aacaacataatagcattcaacacatacttgtaaatatcgcccatcattgatcaaagttttttatatacatctatctatattttccaattaacatagnnnn |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28601123 |
aacaacataatagcattcaacacacacttgtaaatatcgcccatcattgatcaaagttttttatatacatctatctatattttccaattaacatagaaaa |
28601024 |
T |
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| Q |
210 |
nnnnctatatatagtttccaattaataaatttgtcacagat |
250 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
28601023 |
aaaactatatatagtttccagttaataaatttgtcacagat |
28600983 |
T |
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