View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3196_low_29 (Length: 249)

Name: NF3196_low_29
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3196_low_29
NF3196_low_29
[»] chr4 (11 HSPs)
chr4 (18-239)||(55669835-55670057)
chr4 (18-55)||(35808372-35808409)
chr4 (18-54)||(27839283-27839319)
chr4 (18-56)||(34316697-34316735)
chr4 (18-56)||(41956188-41956226)
chr4 (18-55)||(26040336-26040373)
chr4 (18-54)||(2362727-2362763)
chr4 (18-50)||(16559975-16560007)
chr4 (18-58)||(51290526-51290566)
chr4 (18-55)||(31755034-31755071)
chr4 (18-50)||(54400304-54400336)
[»] chr2 (11 HSPs)
chr2 (95-176)||(9215041-9215122)
chr2 (18-55)||(765126-765163)
chr2 (18-55)||(39401511-39401548)
chr2 (18-56)||(17056033-17056071)
chr2 (18-56)||(17068480-17068518)
chr2 (18-56)||(23685638-23685676)
chr2 (18-50)||(9991421-9991453)
chr2 (18-58)||(27495219-27495259)
chr2 (18-57)||(1321264-1321303)
chr2 (18-56)||(17074463-17074501)
chr2 (22-51)||(8033381-8033410)
[»] chr8 (5 HSPs)
chr8 (18-58)||(19389283-19389323)
chr8 (22-55)||(22488765-22488798)
chr8 (18-56)||(35930232-35930270)
chr8 (18-55)||(18808963-18809000)
chr8 (15-55)||(6939251-6939291)
[»] chr1 (15 HSPs)
chr1 (18-55)||(34874663-34874700)
chr1 (18-56)||(41147450-41147488)
chr1 (18-55)||(22346210-22346247)
chr1 (18-54)||(27209695-27209731)
chr1 (18-54)||(28850884-28850920)
chr1 (22-52)||(8772511-8772541)
chr1 (18-55)||(5945516-5945553)
chr1 (22-55)||(7190448-7190481)
chr1 (18-55)||(49508707-49508744)
chr1 (18-54)||(2125681-2125717)
chr1 (18-58)||(11385780-11385820)
chr1 (18-50)||(26060289-26060321)
chr1 (18-54)||(31975583-31975619)
chr1 (18-50)||(38680885-38680917)
chr1 (18-54)||(43433871-43433907)
[»] chr3 (13 HSPs)
chr3 (15-55)||(25102298-25102338)
chr3 (18-55)||(29915551-29915588)
chr3 (18-55)||(29964704-29964741)
chr3 (18-58)||(36730126-36730166)
chr3 (18-54)||(44570363-44570399)
chr3 (18-53)||(37509207-37509242)
chr3 (18-55)||(41346370-41346407)
chr3 (18-55)||(48136699-48136736)
chr3 (18-54)||(1803984-1804020)
chr3 (22-54)||(4195441-4195473)
chr3 (18-54)||(8715479-8715515)
chr3 (18-54)||(9067366-9067402)
chr3 (18-50)||(46055754-46055786)
[»] chr7 (8 HSPs)
chr7 (18-53)||(40763345-40763380)
chr7 (18-55)||(43567482-43567519)
chr7 (18-56)||(29034783-29034821)
chr7 (17-55)||(36279214-36279252)
chr7 (18-50)||(675090-675122)
chr7 (18-54)||(22707144-22707180)
chr7 (18-50)||(44207732-44207764)
chr7 (18-54)||(48454799-48454835)
[»] chr5 (9 HSPs)
chr5 (18-56)||(338739-338777)
chr5 (16-53)||(39567997-39568034)
chr5 (18-56)||(104904-104942)
chr5 (18-56)||(37243942-37243980)
chr5 (18-59)||(28143095-28143136)
chr5 (18-54)||(4962494-4962530)
chr5 (22-54)||(7736271-7736303)
chr5 (18-50)||(15915928-15915960)
chr5 (18-50)||(35653236-35653268)
[»] chr6 (3 HSPs)
chr6 (18-54)||(26572059-26572095)
chr6 (18-54)||(29692318-29692354)
chr6 (18-54)||(32786311-32786347)
[»] scaffold0062 (3 HSPs)
scaffold0062 (18-55)||(16748-16785)
scaffold0062 (18-55)||(26916-26953)
scaffold0062 (18-55)||(37082-37119)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 55669835 - 55670057
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaacttaatcatccaaaa-atgagtaataaaccaatttacttacccttgatgccagttttcc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  55669835 ttatccaatgccccaagggcaatggttagcattctcctaaacttaatcatccaaaaaatgagtaataaaccaatgtacttacccttgatgccagttttcc 55669934  T
Q  117 agacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaacaccagcctataacgagaaccttctttcaaagtaaaccataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55669935 agacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaacaccagcctataacgagaaccttctttcaaagtaaaccataa 55670034  T
Q  217 accctcgggatttcctgtctctg 239  Q
    |||||||||||||||||||||||    
T  55670035 accctcgggatttcctgtctctg 55670057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 35808409 - 35808372
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35808409 ttatccaatgccccaagggcaatggttagcattctcct 35808372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 27839319 - 27839283
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||||||||||||||||||||||    
T  27839319 ttatccaatgccccaagggcaatggttagcattctcc 27839283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 34316735 - 34316697
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34316735 ttatccaatgccccaagggcaatggtgagcattctccta 34316697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 41956226 - 41956188
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  41956226 ttatccgatgccccaagggcaatggttagcattctccta 41956188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 26040373 - 26040336
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||| |||||||||||||||||||    
T  26040373 ttatccaatgccccaaggacaatggttagcattctcct 26040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 2362727 - 2362763
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||| ||||||||||||||||||||||||||||||    
T  2362727 ttatccgatgccccaagggcaatggttagcattctcc 2362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 16560007 - 16559975
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  16560007 ttatccaatgccccaagggcaatggttagcatt 16559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 51290526 - 51290566
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  51290526 ttatccaatgtcccaaggacaatggttagcattctcctaaa 51290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 31755034 - 31755071
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  31755034 ttatccaataccccaatggcaatggttagcattctcct 31755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 54400304 - 54400336
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||||| ||||||||||||||||||    
T  54400304 ttatccaatgccccgagggcaatggttagcatt 54400336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 9215041 - 9215122
Alignment:
Q  95 ttacccttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaaca 176  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |||||||| ||||    
T  9215041 ttacctttgataccagttttccacacagtgttggtgtacttgagacctgaaacaatgttatggttgacctggaaagtgaaca 9215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 765163 - 765126
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  765163 ttatccaatgccccaagggcaatggttagcattctcct 765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 39401548 - 39401511
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39401548 ttatccaatgccccaagggcaatggttagcattctcct 39401511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 17056071 - 17056033
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17056071 ttatccaatgccctaagggcaatggttagcattctccta 17056033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 17068518 - 17068480
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17068518 ttatccaatgccctaagggcaatggttagcattctccta 17068480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 23685676 - 23685638
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  23685676 ttatccaatgccccaagggcaatggttaacattctccta 23685638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9991453 - 9991421
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  9991453 ttatccaatgccccaagggcaatggttagcatt 9991421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27495219 - 27495259
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  27495219 ttattcaatgccccaagtgcaatggttagcattctcctaaa 27495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 1321264 - 1321303
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaa 57  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  1321264 ttatccaatgctccaaggacaatggttagcattctcctaa 1321303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 17074501 - 17074463
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  17074501 ttatctaatgccctaagggcaatggttagcattctccta 17074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 8033381 - 8033410
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattc 51  Q
    ||||||||||||||||||||||||||||||    
T  8033381 ccaatgccccaagggcaatggttagcattc 8033410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 19389323 - 19389283
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19389323 ttatccaatgccccaagggcaatggttagcattctcctaaa 19389283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 22488798 - 22488765
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||    
T  22488798 ccaatgccccaagggcaatggttagcattctcct 22488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 35930232 - 35930270
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  35930232 ttatccaatgctccaagggcaatggttatcattctccta 35930270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 18808963 - 18809000
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  18808963 ttatccaatgccccaagggcaatggttaacattatcct 18809000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 6939251 - 6939291
Alignment:
Q  15 tcattatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||| |||||||||| || |||||||||||||||||||    
T  6939251 tcattattcaatgccccatggacaatggttagcattctcct 6939291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 34874663 - 34874700
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34874663 ttatccaatgccccaagggcaatggttagcattctcct 34874700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 41147488 - 41147450
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  41147488 ttatccaatgccccaaggacaatggttagcattctccta 41147450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 22346247 - 22346210
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||| |||||||||||||||||||||||||||||    
T  22346247 ttatccaaagccccaagggcaatggttagcattctcct 22346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 27209731 - 27209695
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||| ||||||||||||||||||    
T  27209731 ttatccaatgccccaaggacaatggttagcattctcc 27209695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 28850920 - 28850884
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||| |||||||||||||||||||||||||||||||    
T  28850920 ttatctaatgccccaagggcaatggttagcattctcc 28850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 8772511 - 8772541
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattct 52  Q
    |||||||||||||||||||||||||||||||    
T  8772511 ccaatgccccaagggcaatggttagcattct 8772541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 5945516 - 5945553
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  5945516 ttatccaatgctccaaggacaatggttagcattctcct 5945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 7190481 - 7190448
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||| |||||||||||||||    
T  7190481 ccaatgccccaagggcaaaggttagcattctcct 7190448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 49508744 - 49508707
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  49508744 ttatccaatgccccaagggcaatggttaacattttcct 49508707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2125717 - 2125681
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||  ||||||||||||||||||    
T  2125717 ttatccaatgccccaagaacaatggttagcattctcc 2125681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 11385820 - 11385780
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    |||||||||||  ||||||||||||| ||||||||||||||    
T  11385820 ttatccaatgctgcaagggcaatggtcagcattctcctaaa 11385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 26060289 - 26060321
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||| |||||||||||||||||||||    
T  26060289 ttatccaatgctccaagggcaatggttagcatt 26060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 31975583 - 31975619
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| || ||||||||||||||||||||||||    
T  31975583 ttatccaatacctcaagggcaatggttagcattctcc 31975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38680917 - 38680885
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||||||||| |||||||||||||||    
T  38680917 ttatccaatgccccaagagcaatggttagcatt 38680885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 43433871 - 43433907
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  43433871 ttatccaatgccccaagagcaatagttagcattctcc 43433907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 25102338 - 25102298
Alignment:
Q  15 tcattatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  25102338 tcattatccaatgtcccaagggcaatggttagcattctcct 25102298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 29915588 - 29915551
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29915588 ttatccaacgccccaagggcaatggttagcattctcct 29915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 29964741 - 29964704
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29964741 ttatccaacgccccaagggcaatggttagcattctcct 29964704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36730166 - 36730126
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  36730166 ttatccaatgccataagggcaatggttagcattctcctaaa 36730126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 44570399 - 44570363
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44570399 ttatcgaatgccccaagggcaatggttagcattctcc 44570363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 37509207 - 37509242
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctc 53  Q
    |||||||||||||||| |||||||||||||||||||    
T  37509207 ttatccaatgccccaaaggcaatggttagcattctc 37509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 41346370 - 41346407
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  41346370 ttatccaatgccccaaggacaatggttaacattctcct 41346407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 48136736 - 48136699
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  48136736 ttatccaataccccaaggacaatggttagcattctcct 48136699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 1803984 - 1804020
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  1803984 ttatccaatgccccaaggacaatgattagcattctcc 1804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 4195441 - 4195473
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||| |||||||||||||||||||    
T  4195441 ccaatgccccaagagcaatggttagcattctcc 4195473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 8715515 - 8715479
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  8715515 ttatccaatgccctaaggacaatggttagcattctcc 8715479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 9067402 - 9067366
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  9067402 ttatccaatgccctaaggacaatggttagcattctcc 9067366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 46055786 - 46055754
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||| |||||||||||||||||||||    
T  46055786 ttatccaatgctccaagggcaatggttagcatt 46055754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 40763345 - 40763380
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  40763345 ttatccaatgccccaagggcaatggttagcattctc 40763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 43567519 - 43567482
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  43567519 ttatccaatgccccaagggcaatggttagcaatctcct 43567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 29034783 - 29034821
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  29034783 ttatccaatgcctcaaggacaatggttagcattctccta 29034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 36279214 - 36279252
Alignment:
Q  17 attatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  36279214 attatccaatgccccaagagtaatggttagcattctcct 36279252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 675122 - 675090
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||||| |||||||||||||||||||    
T  675122 ttatccaatgcccaaagggcaatggttagcatt 675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 22707144 - 22707180
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  22707144 ttattcaatgccccaaaggcaatggttagcattctcc 22707180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 44207732 - 44207764
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||| ||||||||||||||||||||    
T  44207732 ttatccaatgccacaagggcaatggttagcatt 44207764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 48454835 - 48454799
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  48454835 ttatccaatgccccaagggtaatggttaacattctcc 48454799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 338777 - 338739
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  338777 ttatccaatgccccaagggcaatggttaggattctccta 338739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 39567997 - 39568034
Alignment:
Q  16 cattatccaatgccccaagggcaatggttagcattctc 53  Q
    |||||||||||||||||||||||||||||| |||||||    
T  39567997 cattatccaatgccccaagggcaatggttatcattctc 39568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 104942 - 104904
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  104942 ttatccaataccccaagagcaatggttagcattctccta 104904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 37243942 - 37243980
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  37243942 ttatccaatgcctcaagggcaatgattagcattctccta 37243980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 28143136 - 28143095
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcctaaac 59  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  28143136 ttattcaatgtcccaagggcaatggttagcattctcttaaac 28143095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 4962530 - 4962494
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||| |||||||||||||| |||||||||||    
T  4962530 ttatccaatgtcccaagggcaatgggtagcattctcc 4962494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 7736303 - 7736271
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||| ||||||||||||||||||||||||||    
T  7736303 ccaatgtcccaagggcaatggttagcattctcc 7736271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 15915928 - 15915960
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||||||||| |||||||||||||||    
T  15915928 ttatccaatgccccaagtgcaatggttagcatt 15915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 35653268 - 35653236
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||| |||||||||||||||||||||    
T  35653268 ttatccaatgcaccaagggcaatggttagcatt 35653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 26572095 - 26572059
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26572095 ttatccaatgccccaaggacaatggttagcattctcc 26572059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 29692354 - 29692318
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29692354 ttatccaatgccccaagggcaatgattagcattctcc 29692318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32786311 - 32786347
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||||||||||||||||||    
T  32786311 ttatccaataccccaagggcaatggttagcattctcc 32786347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 16785 - 16748
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  16785 ttatccaatgccctatgggcaatggttagcattctcct 16748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 26953 - 26916
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  26953 ttatccaatgccctatgggcaatggttagcattctcct 26916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 37119 - 37082
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  37119 ttatccaatgccctatgggcaatggttagcattctcct 37082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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