View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_3 (Length: 667)
Name: NF3196_low_3
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 18 - 657
Target Start/End: Original strand, 34623984 - 34624623
Alignment:
| Q |
18 |
attactctatttgtaatatttgagattaaacatcatgaaatgctatttgatatttgatagtaaaatgtgcaaaaacttgtattttatagtaaaatacgtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34623984 |
attactctatttgtaatatttgagattaaacatcatgaaatgctatttgatatttcatagtaaaatgtacaaaaacttgtattttatagtaaaatacgtg |
34624083 |
T |
|
| Q |
118 |
tttagattctagaatcaagatgtgatatcaatgtatttttacatgtccaaattatgtaattcagacacgtataaattacaaaataagtgacacaaacctc |
217 |
Q |
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|||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
34624084 |
tttagattctagaatcgagatgtgatatctatgtgtttttacatgtccaaattatgtaatccaaacacgtataaattacaaaataagtgacacaaatctc |
34624183 |
T |
|
| Q |
218 |
ggtgaacaatgtattttactacattcggattctataatctgaacatgtattttaggtactttaacatgtatgaactgtatagttcgaacgcatattaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34624184 |
ggtgaacaatgtattttactacattcggattctataatctgaacatgtattttaggtactttaacatgtatgaactgtatagttcgaacgcatattaaat |
34624283 |
T |
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| Q |
318 |
gtcataaactaagtgaaacaattattggtgaatgacgtgcttcacgcatccaaattttaaaatttgagctttgaaaaatacataaattacacgtctgagt |
417 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
34624284 |
gtcataaactaagtgaaacaatcattggtgaatgatgtgctttacgcatccaaattttaaaatttgagctttgaaaaatacgtaaattacactactgagt |
34624383 |
T |
|
| Q |
418 |
tatagaatccgaacatgtgaaacacaataattgttgatatgtggtctacaatgcgctgatagtttgtatgatttacaatggaccgataatttatgttgcc |
517 |
Q |
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| T |
34624384 |
tatagaatccgaacatgtgaaacacaataattgttgatatgtggtctacaacgcgctaatagtttgtatgatttacaatggaccgataatttatgttgcc |
34624483 |
T |
|
| Q |
518 |
tataatgcacaaacacttgtataaattggtgtgtttgattcattttcattcacaacagaaaacacattaaatgaactctaatctaaatgcagtttacaaa |
617 |
Q |
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| T |
34624484 |
tataatgcacaaacacttgtataaattggtgtgtttgattcattttcattcacaacagaaaacacattaaatgaactctaatctaaatgcagtttacaaa |
34624583 |
T |
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| Q |
618 |
ataatgggaaacctaatttgtttaggatcaatgatgatgt |
657 |
Q |
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| T |
34624584 |
ataatgggaaacctaatttgtttaggatcaatgatgatgt |
34624623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 523 - 582
Target Start/End: Complemental strand, 43824661 - 43824602
Alignment:
| Q |
523 |
tgcacaaacacttgtataaattggtgtgtttgattcattttcattcacaacagaaaacac |
582 |
Q |
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| T |
43824661 |
tgcacaaaaacttgtataaattaacgtgtttgattcatttttattcacaacataaaacac |
43824602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 568
Target Start/End: Complemental strand, 34346727 - 34346680
Alignment:
| Q |
521 |
aatgcacaaacacttgtataaattggtgtgtttgattcattttcattc |
568 |
Q |
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|||||||||| | |||||||||||| |||| ||||||||||||||||| |
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| T |
34346727 |
aatgcacaaaaatttgtataaattgatgtgcttgattcattttcattc |
34346680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 17232281 - 17232232
Alignment:
| Q |
523 |
tgcacaaacacttgtataaattggtgtgtttgattcattttcattcacaa |
572 |
Q |
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| T |
17232281 |
tgcactaaaacttgtataaattggtttgtttgattcattatcattcacaa |
17232232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 562
Target Start/End: Complemental strand, 34341265 - 34341227
Alignment:
| Q |
524 |
gcacaaacacttgtataaattggtgtgtttgattcattt |
562 |
Q |
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| T |
34341265 |
gcacaaaaacttgtataaattggtgtgtttggttcattt |
34341227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 532 - 568
Target Start/End: Complemental strand, 26237533 - 26237497
Alignment:
| Q |
532 |
acttgtataaattggtgtgtttgattcattttcattc |
568 |
Q |
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| T |
26237533 |
acttgtattaattggcgtgtttgattcattttcattc |
26237497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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