View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_31 (Length: 241)
Name: NF3196_low_31
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 5755977 - 5756198
Alignment:
| Q |
4 |
attttgttgataaaaattaaaattgcagaagtatcatatatttcagcgaaaaatcatagaacagtgtgtggttggactaatattccatgattaaaacaaa |
103 |
Q |
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| T |
5755977 |
attttgttgataaaaataaaaattgcagaagtatcatatatttcagcgagaaatcacagaacagtgagtggttggactaatatttcatgattaaaacaaa |
5756076 |
T |
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| Q |
104 |
actggaataagatcttcaaacctttcatttttgaaggnnnnnnncgtcgtccaacaactgcgcttctaccagtttccaaaatcatagttaaattgaaatg |
203 |
Q |
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| T |
5756077 |
actggaataagatcttcaaacctttcatttttgaagg--aaaaacgtcgtccaacaactgcgcttctaccagtttccaaaatcttagttaaattgaaatg |
5756174 |
T |
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| Q |
204 |
atttgttcaatcatgtcaataatg |
227 |
Q |
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| T |
5756175 |
atttgttcaatcatgtcaataatg |
5756198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 5763178 - 5763239
Alignment:
| Q |
166 |
cttctaccagtttccaaaatcatagttaaattgaaatgatttgttcaatcatgtcaataatg |
227 |
Q |
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| T |
5763178 |
cttctaccagtttccaaaatcatagttaaattgaaatgatttgttaaatcatatcaataatg |
5763239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5763046 - 5763131
Alignment:
| Q |
1 |
atgattttgttgataaaaattaaaattgcagaagtatcatatatttcagcgaaaaatcatagaacagtgtgtggttggactaatat |
86 |
Q |
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| T |
5763046 |
atgattttgtagataaacataaaaattgcagaactatcatatatttcagcgtgaaatcacagaacagtgaacggttggaataatat |
5763131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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