View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3196_low_34 (Length: 236)

Name: NF3196_low_34
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3196_low_34
NF3196_low_34
[»] chr6 (1 HSPs)
chr6 (19-232)||(28849912-28850125)
[»] chr1 (2 HSPs)
chr1 (19-235)||(35372359-35372572)
chr1 (19-234)||(35378009-35378219)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 28849912 - 28850125
Alignment:
Q  19 acaaacccaccgaacgtttctctaatggcctaaacattcatgacataatcagtatgcatttatgaattaatttattattagcttacaagctagtgaaaat 118  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  28849912 acaaactcaccgaacgtttctctaatggcctaaacattcatgacataatcagtatgtgtttatgaattaatttattattagcttacaagctagtgaaaat 28850011  T
Q  119 tgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatattgtgacatgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28850012 tgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatattgtgaaatgg 28850111  T
Q  219 ttagattgcaggtg 232  Q
    ||| ||||||||||    
T  28850112 ttaaattgcaggtg 28850125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 35372572 - 35372359
Alignment:
Q  19 acaaacccaccgaacgtttctctaatggcctaaacattcatgacataatcagtatgcatttatgaattaatttattattagctta----caagctagtga 114  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||  ||||       | || || ||| ||||    |||||||||||    
T  35372572 acaaacccaccggacgtttctctaatggcctaaatattcctgacataatcagtatgtgttta-------acttgttcttaacttaaatacaagctagtga 35372480  T
Q  115 aaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatattgtgac 214  Q
    |||| ||  |||||||||| ||||||||||||| | |||||||||| || ||||||||||| ||||||| ||||||||||||||| |||| | || |||     
T  35372479 aaatagtgcatgtaatttacttgcttaacaatgacaaattgttttggttatagtctctaatgtgcatgcattgcttaaagatgagatttgcttttatgaa 35372380  T
Q  215 atggttagattgcaggtgagc 235  Q
    ||||||| |||||||||||||    
T  35372379 atggttaaattgcaggtgagc 35372359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 35378219 - 35378009
Alignment:
Q  19 acaaacccaccgaacgtttctctaatggcctaaacattcatgacataatcagtatgcatttatgaattaatttattattagctta----caagctagtga 114  Q
    ||||||| || | |||||||||||||||||||||||||| ||| ||||||||||||  ||||       |||| |||||||||||    | |||||||||    
T  35378219 acaaacctactggacgtttctctaatggcctaaacattcctgatataatcagtatgagttta-------atttgttattagcttaattactagctagtga 35378127  T
Q  115 aaattgtatatgtaatttatttgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatattgtgac 214  Q
    |||| |||||||||||||| |||||||||||||  |||| | |||| ||||||| ||| |||||||||| |||| |||||  | |||||||||||||||     
T  35378126 aaatagtatatgtaatttacttgcttaacaatgttgaatcg-tttggttctagt-tctcatttgcatgcattgcataaagtagggttttgatattgtgaa 35378029  T
Q  215 atggttagattgcaggtgag 234  Q
    || |||| ||||||||||||    
T  35378028 attgttaaattgcaggtgag 35378009  T

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