View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_35 (Length: 236)
Name: NF3196_low_35
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 37029416 - 37029589
Alignment:
| Q |
1 |
tggacaaatatttagaagatatagaaaagttgtttaaataattgacaagtacaaaacattgtaaaaattatgcgggattccttttaaggaacttaaataa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37029416 |
tggacaaatatttagaagatatagaaaagttgtttaaataattaagaagtacaaaacattgtaaaaattatgcgggattccttttaaagaacttaaataa |
37029515 |
T |
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| Q |
101 |
atgtaatggatgcagatgcattgaagttactccaaatcgacacgatggacaacatgatattgtggtatcaaatt |
174 |
Q |
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| T |
37029516 |
atgtaatggatgcagatgcattgaagttactccaaatagacacgatggacaacatgatattgtggtatgaaatt |
37029589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 48292117 - 48292085
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatcca |
210 |
Q |
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| T |
48292117 |
taaagattgatgaacacccttttaattcatcca |
48292085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 16650657 - 16650621
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatccacccc |
214 |
Q |
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| T |
16650657 |
taaagattgatgaacacccttttaattcatccacccc |
16650621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 17625017 - 17624981
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatccacccc |
214 |
Q |
| |
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| T |
17625017 |
taaagattgatgaacacccttttaattcatccacccc |
17624981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 40066808 - 40066768
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatccaccccatac |
218 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| |||||| |
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| T |
40066808 |
taaagattgatgaacaaccttttaattcatccactccatac |
40066768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 34948721 - 34948763
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatccaccccatacac |
220 |
Q |
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| T |
34948721 |
taaagattgatgaacacccttttaattcattcaccctatacac |
34948763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 38114090 - 38114049
Alignment:
| Q |
173 |
ttggataaagattgatgaacacccttttaattcatccacccc |
214 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||||||| |
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| T |
38114090 |
ttgggtaaaaattgatgaacacccttttaattcatccacccc |
38114049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 5726424 - 5726461
Alignment:
| Q |
178 |
taaagattgatgaacacccttttaattcatccacccca |
215 |
Q |
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| T |
5726424 |
taaagattgatgaacacccttttaattcaatcacccca |
5726461 |
T |
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