View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_36 (Length: 231)
Name: NF3196_low_36
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 9958343 - 9958536
Alignment:
| Q |
32 |
ttatttttaccatcgcaatcgaagagaaaagcttcgacagaatctaatacatctttgaaattctcaactgaaagtgcctgcgactgcaacgaactcatca |
131 |
Q |
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| T |
9958343 |
ttatttataccatcgcaatcgaagagaaaagcttcgacagaatctaatacatctttgaaattctcaactgaaagtgcctgcgactgcaacgaactcatca |
9958442 |
T |
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| Q |
132 |
aagcaggtgtat------------cttccaatccaatcaatcacaaggaaacactgcgtacgtgcttctacgctaccttactttttaccggatc |
213 |
Q |
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| T |
9958443 |
aagcaggtgtatcagtatcttccacttccaatccaatcaatcacaaggaaacactgcgtacgtgcttctacgctaccttactttttaccggatc |
9958536 |
T |
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