View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_37 (Length: 224)
Name: NF3196_low_37
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 39545845 - 39546031
Alignment:
| Q |
19 |
aataaaaaacaaaatcagatttctatgacacataaaacacgataaattgacgagactgcaggacaaaaattactttgacgaagaaaacacaatgtagttg |
118 |
Q |
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| T |
39545845 |
aataaaaaacaaaatcaaatttctatgacacataaaacacgataaattgacgagactgcaggacaaaaattactttgacgaagaaaacacaatgtagttg |
39545944 |
T |
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| Q |
119 |
tcaaatttaaaaccaacatgagtagttatgtcaaaatctcaaaacatttatgttctttctattgtacgaaacttatgtccttttcat |
205 |
Q |
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| T |
39545945 |
tcaaatttaaaaccaacacgagtagttatgtcaaaatctcaaaacatttatgttctttctattgtacgaaacttatgtccttttcat |
39546031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 43719504 - 43719609
Alignment:
| Q |
19 |
aataaaaaacaaaatcagatttctatgacacataaaacacgataaattgacgagactgcaggacaaaaattactttgacgaagaaaacacaatgtagttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
43719504 |
aataaaaaacaaaatcagatttctatgacacataa----------attgacgagactgcaggacaaaaattactttaacgaagaaaacacaatatagttg |
43719593 |
T |
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| Q |
119 |
tcaaatttaaaaccaa |
134 |
Q |
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|||||||||||||||| |
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| T |
43719594 |
tcaaatttaaaaccaa |
43719609 |
T |
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