View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3196_low_39 (Length: 206)
Name: NF3196_low_39
Description: NF3196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3196_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 6338875 - 6339049
Alignment:
| Q |
17 |
gaactaataacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaatattcacctgaaaatcatgagga |
116 |
Q |
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| T |
6338875 |
gaactaataacctaaataaaataatataacgttcattagtggctcgatatatctgataagttcagtgattgctgaaatattcacctgaaaatcatgagga |
6338974 |
T |
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| Q |
117 |
ttttacctcattttgtttaagatcccaatatttaacttgcttatcatcaccagcagaaaacatgtaagtatgttt |
191 |
Q |
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| T |
6338975 |
ttttacctcattttgtttaagatcccaacatttaacttgcttatcatcaccagcagaaaacatgtaagtatgttt |
6339049 |
T |
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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 14193585 - 14193764
Alignment:
| Q |
20 |
ctaataacctaaataaaataatataacgttcattagtggctcgatatatctgata-agttcagtgattgctgaaatattcacctgaaaatca-----tg- |
112 |
Q |
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|||||||||||||||||| |||||||| | | |||||||| ||||||| ||| ||||| || |||||||||||||||||| ||||| || || |
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| T |
14193585 |
ctaataacctaaataaaacaatataacatgctttagtggccagatatattcaatagagttccgtaattgctgaaatattcaccagaaaaacaaatactgt |
14193684 |
T |
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| Q |
113 |
agga-ttttacctcattttgtttaagatcccaatatttaacttgcttatcatcaccagcagaaaacatgtaagtatgttt |
191 |
Q |
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|||| |||||||| ||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
14193685 |
aggaattttaccttattctgttcaagatcccaacatttaacttgtttatcatcaccagcagaaaacatgtaggtatgttt |
14193764 |
T |
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